PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G393700.1.p
Common NameLOC101756484, SETIT_040272mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 313aa    MW: 35151.2 Da    PI: 5.8983
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G393700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1149.5e-36381302103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++++++d+++++++sw e+g++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg k+
  Seita.9G393700.1.p  38 FLTKTFQLVDDPRTDHVVSWGEDGSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFKKGAKH 119
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+ks+
  Seita.9G393700.1.p 120 LLSEIHRRKSS 130
                         ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.9E-3827121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.8E-5834127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.84E-3435127IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAFLVERGSG GGGETVVSKA MEMEMMSSHA KPVVPAPFLT KTFQLVDDPR TDHVVSWGED  60
GSTFVVWRPP EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVADRWEFAN EFFKKGAKHL  120
LSEIHRRKSS SCSQPPQQPF PPHQPYLSLF SPPPPPHPPP SAYRVREEDH HGGGKDFLAT  180
LSEDNRELRR RNSLLLSELA HMRRLYNDII YFLQNHVEPV APPPPPAATG CRLVELGSGD  240
TWPPTTRRPR GDDDDDEAPV KLFGVRLNDG KKRKAQAAVL LEEEDDDDDR CDGDGDHING  300
HGDGDDQGSE TY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-23101291131Heat shock factor protein 1
5d5v_B3e-23101291131Heat shock factor protein 1
5d5v_D3e-23101291131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G393700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432491e-168AC243249.1 Panicum virgatum clone PV_ABa094-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984281.10.0heat stress transcription factor B-4d
SwissprotQ10KX81e-107HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLK4AMX60.0K4AMX6_SETIT; Uncharacterized protein
STRINGSi040272m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-61heat shock transcription factor B4