PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G384800.1.p | ||||||||
Common Name | SETIT_038845mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 34081.5 Da PI: 7.8243 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+++G+g+W+++++ g+ R+ k+c++rw +yl Seita.9G384800.1.p 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPASTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.2 | 2.2e-14 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eEd l++++ ++lG++ W++Ia++++ Rt++++k++w+++l Seita.9G384800.1.p 67 RGGFSGEEDRLIAHLQALLGNR-WAAIASYLP-DRTDNDVKNYWNTHL 112 678999****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.885 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.66E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.507 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.4E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.46E-11 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MGRPPCCDKE GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PASTGLMRCS KSCRLRWTNY 60 LRPGIRRGGF SGEEDRLIAH LQALLGNRWA AIASYLPDRT DNDVKNYWNT HLKKKLLLLQ 120 QQQKMQQRAS AALSTPPPPP HKGQWELKLQ TDIDLARRAL RDALSCSPPA PAPGTTTTSG 180 HGGTGPAPPP LIAEPAAALA QAYALTARDV PGVLDGWSPR AGKNGRSGPA TPPPPVAAES 240 ASGSTSELTE CSASVSSASD KRAAPVAGQL FAREEEKAAA DGEVPPLSEI ESWLLEDGGG 300 EQKPVLDGLL LDAALRNFGF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G384800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962848 | 1e-148 | EU962848.1 Zea mays clone 246006 myb transcription factor MYB30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984215.1 | 0.0 | myb-related protein 306 | ||||
TrEMBL | A0A368SQ64 | 0.0 | A0A368SQ64_SETIT; Uncharacterized protein | ||||
STRING | Si038845m | 1e-173 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62470.2 | 2e-79 | myb domain protein 96 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G384800.1.p |