PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G384500.1.p | ||||||||
Common Name | LOC101761750, SETIT_037016mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 273aa MW: 29848.4 Da PI: 6.4259 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.3e-05 | 37 | 86 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + erE+ Rd++N+ f eL +l + + + Ka iL+ +++ +++L Seita.9G384500.1.p 37 RKVHKAEREKLKRDHLNDLFVELGNMLEAD----RQNNGKACILTDTTRILRDL 86 677889*********************997....57788888988888887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-8 | 36 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.474 | 36 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.1E-10 | 36 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.71E-4 | 37 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MVPSERGSVA TAVSTAAADK LLHGPIAGKK CKKAAPRKVH KAEREKLKRD HLNDLFVELG 60 NMLEADRQNN GKACILTDTT RILRDLLLQV ESLRKEHSNL QNESHYVAIE RNELQDENGV 120 LRKEISELQD ELRMRTSSNP ADWGHGNAGL NPPVPHPASA VFSSQQAMQP PTIASTVFPL 180 QPPLAPSAVI EQSYATPPSL ELKLFPGAES VEVHERSEDQ EAPNHVARPQ ARYPPQSASW 240 PVTLFSGLPR MEDEQCSSST TSSSKETSTG RD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G384500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984211.1 | 0.0 | transcription factor BHLH062 | ||||
Swissprot | Q69V10 | 2e-85 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | K4ADQ9 | 0.0 | K4ADQ9_SETIT; Uncharacterized protein | ||||
STRING | Si037016m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 1e-29 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G384500.1.p |
Entrez Gene | 101761750 |
Publications ? help Back to Top | |||
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