PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G380100.1.p
Common NameLOC101778650, SETIT_034054mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CAMTA
Protein Properties Length: 1020aa    MW: 113973 Da    PI: 6.4899
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G380100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.32.2e-56211373118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e +krwl+++ei++iL n++ +++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een+
  Seita.9G380100.1.p  21 QEaRKRWLRPTEICEILSNYKLFSIAAEPPSRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENE 111
                         5559*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrr+ywlLee++++ivlvhylevk
  Seita.9G380100.1.p 112 NFQRRTYWLLEEDFTHIVLVHYLEVK 137
                         ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.72616142IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-7719137IPR005559CG-1 DNA-binding domain
PfamPF038597.8E-5022136IPR005559CG-1 DNA-binding domain
CDDcd001020.0034442530No hitNo description
Gene3DG3DSA:2.60.40.101.3E-8442531IPR013783Immunoglobulin-like fold
PfamPF018337.0E-8443526IPR002909IPT domain
SuperFamilySSF812964.36E-18443529IPR014756Immunoglobulin E-set
SuperFamilySSF484031.07E-15621736IPR020683Ankyrin repeat-containing domain
CDDcd002042.74E-12623734No hitNo description
Gene3DG3DSA:1.25.40.202.3E-16631737IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.059642736IPR020683Ankyrin repeat-containing domain
PfamPF127963.8E-6648736IPR020683Ankyrin repeat-containing domain
SMARTSM002480.07675704IPR002110Ankyrin repeat
PROSITE profilePS5008810.125675707IPR002110Ankyrin repeat
SMARTSM00248870714743IPR002110Ankyrin repeat
SuperFamilySSF525409.03E-8838895IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.045844866IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791845874IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055846865IPR000048IQ motif, EF-hand binding site
SMARTSM000150.026867889IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.249868892IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011870889IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1020 aa     Download sequence    Send to blast
MAENRKFVLP GQPPDFSQIL QEARKRWLRP TEICEILSNY KLFSIAAEPP SRPPSGSLFL  60
FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEVKGCK QSFSRVKEEF MQLSNVDSPS CSNSITSQNH MGPQTMEAAE  180
SPISGQISDY EDTESDNFRA SSRYHPLAEM QQPVDGFMTE NMLYASSSTV GSRQGYHGEM  240
LPTTANVDNH SFSHHDIARM FDNANTGLSS VSRILFDSVP FNEPFTDYST GFTEPTLHSS  300
FACLEANNLE DSSHLQTFTS EALYTNHLSK EEADALSFAG IPSSEVNGSR CTESSIKHPL  360
LKQSSLDLLT IEPTGLKKHD SFSRWMSKEL KEVVDLGIKS TSDAFWSNIE TVKVPDRCNV  420
LTNEQLDAYV VSPSLSQDQL FSIIDVSPSC AYIGTNTKIS VTGTFLVKKE HVENRKWSCM  480
FGNIEVPAEI LTDGTLRCYA PEHQSGRVPF YVTCSNRVAC SEVREFEYRD PDAQYVETSP  540
SQANGVNEMH LHIRLEKLLT LGPDDHGMVV LSSGDEKYEV INAINSLMLD AKWSDQESAS  600
ANEVVSTARD QSLKKLVKEK LHHWLICKIN DDGKGPNVLC KEGQGVIHLV AALGYDWAIR  660
PIIVAGVNVN FRDAHGWTAL HWAASSGRER TIGVLIANGA AAGALTDPTS EFPSGRSPAD  720
LASVNGHKGI AGFLAEAALT SHLSALTIRE SKDSTVEVCG LPAVEGLTGI NSAQLAGEDS  780
HAESLEGSLS AVRKSTQAAA RIFQAFRVES FHRKKIVEYG DDNCGLSDER TLSLVSLKGQ  840
HDPHLHSAAV RIQNKFRGWK GRKEFMIIRQ RIVKLQAHVR GHQVRRNYRK VVWTVGIVEK  900
VILRWRRKRP GLRGFRPEKQ LEGPSEIQPA KVEDEYDFLH DGRRQAEARL QRALARVHSM  960
SQYPEAREQY HRLTTCVAEM KQPMMMQDEM LSEAAGGDVN DFMAGLEDLI CIDDAAMIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G380100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570630.0EU957063.1 Zea mays clone 1581734 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984163.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLK4A5A00.0K4A5A0_SETIT; Uncharacterized protein
STRINGSi034054m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1