PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G378600.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 359aa    MW: 38323.5 Da    PI: 7.0718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G378600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-14194238554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h ++Er+RR++iN++f eL  ++P +     kK++Ka+iL  A++Y+k+L
  Seita.9G378600.2.p 194 HIIAERKRREKINQRFVELSAVIPGL-----KKMDKATILSDATRYVKEL 238
                         899***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.732189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-15194242No hitNo description
PfamPF000101.6E-11194238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-16194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-17194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-14195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MTEIDSTGAA VRGGAHYKRR DPPYTSLNTT KYMEDSILFM QWAMNTLQHE HPAPAVVDEA  60
TSPSLQPLPE ASYAAETVQE SLITAAHAHA AATGWSSRDT TTRGGHVLTN SAWHAAPTGG  120
SSGSGTNNLP VNWNFSAVSA ELASDGTPET PIFTTKRGLP ELAAYGSPMP LIRRAGLKST  180
GSTPTSSAPY AHDHIIAERK RREKINQRFV ELSAVIPGLK KMDKATILSD ATRYVKELRE  240
KLNARDAGGV VIRSSGTVVL VKRPCYAPPD DEEGAPLWAP AAVRKPLPEI DVQLSGNNVM  300
VRVLCENGKG VVARVLAEVE DLHLSIVDAS VIPFPACALN ITITAKVGLS LFLSLQFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202ERKRRE
2198203RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G378600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071906e-51AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
GenBankHQ8588626e-51HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984147.30.0transcription factor bHLH18-like
TrEMBLA0A368SRX70.0A0A368SRX7_SETIT; Uncharacterized protein
STRINGPavir.Ia03339.1.p1e-112(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-36bHLH family protein