PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G378600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 374aa MW: 39983.3 Da PI: 7.3828 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.8 | 4.8e-14 | 194 | 238 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR++iN++f eL ++P + kK++Ka+iL A++Y+k+L Seita.9G378600.1.p 194 HIIAERKRREKINQRFVELSAVIPGL-----KKMDKATILSDATRYVKEL 238 899***********************.....9****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.732 | 189 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.00E-15 | 194 | 242 | No hit | No description |
SuperFamily | SSF47459 | 6.94E-16 | 194 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-11 | 194 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.5E-17 | 194 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-14 | 195 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.719 | 300 | 373 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MTEIDSTGAA VRGGAHYKRR DPPYTSLNTT KYMEDSILFM QWAMNTLQHE HPAPAVVDEA 60 TSPSLQPLPE ASYAAETVQE SLITAAHAHA AATGWSSRDT TTRGGHVLTN SAWHAAPTGG 120 SSGSGTNNLP VNWNFSAVSA ELASDGTPET PIFTTKRGLP ELAAYGSPMP LIRRAGLKST 180 GSTPTSSAPY AHDHIIAERK RREKINQRFV ELSAVIPGLK KMDKATILSD ATRYVKELRE 240 KLNARDAGGV VIRSSGTVVL VKRPCYAPPD DEEGAPLWAP AAVRKPLPEI DVQLSGNNVM 300 VRVLCENGKG VVARVLAEVE DLHLSIVDAS VIPFPACALN ITITAKVEAT FIVTAEEIIG 360 RVSSALSQQQ HRK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 202 | ERKRRE |
2 | 198 | 203 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G378600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107190 | 6e-51 | AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence. | |||
GenBank | HQ858862 | 6e-51 | HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984147.3 | 0.0 | transcription factor bHLH18-like | ||||
TrEMBL | A0A368SPZ4 | 0.0 | A0A368SPZ4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ia03339.1.p | 1e-112 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G378600.1.p |