PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G369000.1.p
Common NameLOC101771369, SETIT_040237mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 529aa    MW: 54979.9 Da    PI: 8.062
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G369000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS204.27.5e-631525232374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalkl..f 84 
                         ++lL  cA av++g+l++aq+l   l elas +gd+++Rlaa+ + AL++rl    ++  ++++++ + ++        + +l+  +l  f
  Seita.9G369000.1.p 152 EQLLNPCAAAVEAGNLSRAQHLFYVLGELASFSGDANHRLAAHGLHALSRRLPAaVGPAAAASVRVPPCERPApafagAEPRLFRASLirF 242
                         689*************************************************99667777777755555544444654333333333379* PP

                GRAS  85 sevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg....skeeleetgerLak 167
                         +evsP++ + + +aN aI +a++    + +H++D+++s+G+QWp+Ll++L+  p  + pps+R+T+v++ ++      +         L +
  Seita.9G369000.1.p 243 HEVSPWFALPNALANAAIARAAAAGapRPLHVVDLGVSHGVQWPTLLESLTRMPggRAPPSVRLTVVAAGTPPapfsASPPGYDFSPHLLR 333
                         *******************99876657899**********************99656699*******9977667888888899999***** PP

                GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                         +A+++++p+ ++   a      ++++L   pgEal+V+l+++l ++       ++er ++L+ v++l+P++vv++e +    +++ + +f+
  Seita.9G369000.1.p 334 YAKSINLPLAISR--AA--CLDSVHSL-AAPGEALVVCLQFRLGHTT------ADERARILNKVRGLNPELVVLSEVDGGGVDGTAAGGFA 413
                         **********998..33..33456888.789**********999997......556789******************************** PP

                GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
                           le  + +++s++a +    + r   Er+ll+ e+   va+++ +     e    Wrer+ +aGF++++++++a+++a++llrk++ +++
  Seita.9G369000.1.p 414 ARLELLWRFLESTSAAF----KGRDGEERRLLEAEAGTSVAAAEVA----GEGRDAWRERMAAAGFEEAAFGDEAVESARSLLRKYDgGWE 496
                         *************8886....5555556666666677777776666....566679*******************************6555 PP

                GRAS 349 yrve.eesgslvlgWkdrpLvsvSaWr 374
                         ++    + g++ l Wk +p+ ++S Wr
  Seita.9G369000.1.p 497 MSAPaGSAGAVALRWKAQPVSFCSLWR 523
                         555524466666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.405125501IPR005202Transcription factor GRAS
PfamPF035142.6E-60152523IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MKPMSCHDQE HPAELAAATS STGFDWLEDS LSFLAADVDI AGGYGWWCNP AAAQQDDIGS  60
VVAHTLSPPA PLPTSSSPLA HASPSIASPV VSSPSEPSSK KRKSPAHRAS GHSSSNQRRR  120
AERDRPGGGG NGKKGGSKGG GAGSDRDTRW AEQLLNPCAA AVEAGNLSRA QHLFYVLGEL  180
ASFSGDANHR LAAHGLHALS RRLPAAVGPA AAASVRVPPC ERPAPAFAGA EPRLFRASLI  240
RFHEVSPWFA LPNALANAAI ARAAAAGAPR PLHVVDLGVS HGVQWPTLLE SLTRMPGGRA  300
PPSVRLTVVA AGTPPAPFSA SPPGYDFSPH LLRYAKSINL PLAISRAACL DSVHSLAAPG  360
EALVVCLQFR LGHTTADERA RILNKVRGLN PELVVLSEVD GGGVDGTAAG GFAARLELLW  420
RFLESTSAAF KGRDGEERRL LEAEAGTSVA AAEVAGEGRD AWRERMAAAG FEEAAFGDEA  480
VESARSLLRK YDGGWEMSAP AGSAGAVALR WKAQPVSFCS LWRPACSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-3014752583475Protein SHORT-ROOT
5b3h_B5e-3014752529421Protein SHORT-ROOT
5b3h_E5e-3014752529421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G369000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704558.10.0nodulation-signaling pathway 1 protein
TrEMBLK4AMU10.0K4AMU1_SETIT; Uncharacterized protein
STRINGSi040237m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-86GRAS family protein