PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G367200.3.p | ||||||||
Common Name | LOC101767581, SETIT_036728mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YA | ||||||||
Protein Properties | Length: 308aa MW: 33786.6 Da PI: 9.6379 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.8 | 3.8e-33 | 151 | 207 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rakle+++kl k+rkpylheSRh hA++R Rg+gGrF Seita.9G367200.3.p 151 EEPIFVNAKQYHAILRRRQMRAKLEAQNKL-VKGRKPYLHESRHCHAMKRVRGPGGRF 207 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.5E-37 | 149 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.047 | 150 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.2E-27 | 152 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.4E-23 | 153 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 155 | 175 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.4E-23 | 184 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MLLREMDGDP FHTMPNYDFL SGNGYSMKQL NCSNSDRDSS STKSEQSRQD LSAVSDGSLN 60 GQHTPTQSEN NDSCGKRDQG MVKSVLSFGN PEADFSPPKF DYSQPFACAS YTADPYYGGV 120 LTGYSSNSIV RPQINGATNS RVPLPIEPAA EEPIFVNAKQ YHAILRRRQM RAKLEAQNKL 180 VKGRKPYLHE SRHCHAMKRV RGPGGRFLNK KELQEQQQRE KAPPSLHTPT GGVGKMAFGR 240 NLCPENSTSH SPSTSSGISS VSNGGGMMAH QEHISFSSPN FLPSMNFRKE NGSEKMAVNG 300 VRHRTPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-21 | 151 | 212 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G367200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984046.1 | 0.0 | nuclear transcription factor Y subunit A-4 isoform X2 | ||||
TrEMBL | K4AD02 | 0.0 | K4AD02_SETIT; Uncharacterized protein | ||||
STRING | Si036728m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 4e-33 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G367200.3.p |
Entrez Gene | 101767581 |