PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G364400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 417aa    MW: 43719.9 Da    PI: 9.817
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G364400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof104.37e-33102160361
              zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          + l cprC st+tkfCyynnyslsqPr+fCk+CrryWt+GGalr++P  ++ r+++++
  Seita.9G364400.1.p 102 ASGLMCPRCRSTETKFCYYNNYSLSQPRHFCKTCRRYWTHGGALRDLPFSSSVRRRRRN 160
                         56789***********************************************9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2585149IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427105159IPR003851Zinc finger, Dof-type
PfamPF027012.0E-29105159IPR003851Zinc finger, Dof-type
PROSITE patternPS013610107143IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMHDMMRRKQ TTKEDQTFST MPYHGRIPTH GGGGTGSGSK EAHRYTQHQL PRLPGAPMAP  60
HLSDTPAEAS ASADDGSAGG SCWVKPGCMM ELARLAKIPQ PASGLMCPRC RSTETKFCYY  120
NNYSLSQPRH FCKTCRRYWT HGGALRDLPF SSSVRRRRRN KPSNNKQTSS KVACCGAFSG  180
STGMSPSSSP SSGATIFSGR VATAATAILK PLEQLLIGGA EHHRAGASRL WFPGHSSQDP  240
VPLGYRHQLG NSRGAATTIR LEHQRYLPQR QPFSLLGYKN GGTAPATSAI CPFSEGARGA  300
EAASFAGQMH AAISRARGSA AVTTTELASE MMAGNPPIPS TEMGTLASSP GEFLVGVQGD  360
HDLFHFLGSG SWACGYGSTA GNNGSGGGSS CTAAPGSAWP DPSGFTSSSS GRSTIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153160VRRRRRNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G364400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0839429e-35AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBankAC1376989e-35AC137698.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0014A21, from chromosome 3, complete sequence.
GenBankAP0149599e-35AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126119e-35CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685501.10.0dof zinc finger protein 1-like
TrEMBLA0A368SPJ50.0A0A368SPJ5_SETIT; Uncharacterized protein
STRINGSi036341m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2288456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.18e-29Dof family protein