PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G359600.2.p
Common NameSETIT_035317mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 374aa    MW: 40743.2 Da    PI: 8.7795
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G359600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-3190146259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK vkg e+prsYY+Ct+a+Cpvkkkvers  ++++++i+Y+g+Hnh+
  Seita.9G359600.2.p  90 DDGYNWRKYGQKAVKGGEYPRSYYKCTHASCPVKKKVERSG-EGHITQIIYRGQHNHQ 146
                         8***************************************9.***************8 PP
2WRKY104.75.1e-33258316159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  Seita.9G359600.2.p 258 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 316
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-2886148IPR003657WRKY domain
SuperFamilySSF1182906.41E-2588148IPR003657WRKY domain
SMARTSM007743.9E-3389147IPR003657WRKY domain
PROSITE profilePS5081123.39990148IPR003657WRKY domain
PfamPF031066.4E-2490146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-36245318IPR003657WRKY domain
SuperFamilySSF1182901.57E-29250318IPR003657WRKY domain
PROSITE profilePS5081137.172253318IPR003657WRKY domain
SMARTSM007741.0E-38258317IPR003657WRKY domain
PfamPF031061.2E-25259316IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSHQQALAQV TAQAVHSQYN MINNSDYSIP FSSTTKPAAN VKLQHVNPAN VTSTQEISTL  60
PSHTGNNNIE PNEVSQGLQN SAPTFDKPAD DGYNWRKYGQ KAVKGGEYPR SYYKCTHASC  120
PVKKKVERSG EGHITQIIYR GQHNHQRPPK RRSKDGGGLL NEADDFHENE DASTRSEPGS  180
QDHSGKHGGS NDGLAGPSVS RRREGDEQLS GSSDSEEEAD DEQRVGNGDA GRANANRRHV  240
PTPARRIIVQ TTSEVDLLDD GYRWRKYGQK VVKGNPHPRS YYKCTYQGCD VKKHIERSSQ  300
DPKAVITTYE GKHSHDVPAA RNSSHAAAAA ANANASSSSS LPHKGQNSAS SSRKRADMSS  360
ASSMLLKEEN EIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-3990319878Probable WRKY transcription factor 4
2lex_A5e-3990319878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G359600.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983974.30.0probable WRKY transcription factor 4 isoform X1
RefseqXP_012698576.10.0probable WRKY transcription factor 4 isoform X2
SwissprotQ9ZQ705e-90WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A368SPB60.0A0A368SPB6_SETIT; Uncharacterized protein
TrEMBLK4A8W10.0K4A8W1_SETIT; Uncharacterized protein
STRINGSi035317m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-77WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]