PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G356700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 213aa    MW: 24349 Da    PI: 10.0376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G356700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.4e-18113204299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +k+  ++++ +   l+lp +f++eh   +e +k +tl de+  +++v++    ++++y +t  W++F+ +++L++gD +vF+l+++++f  
  Seita.9G356700.1.p 113 LKTV-SKYYATAFSLSLPPHFCREHL--PEHGKVITLVDEEDDEFDVQYYKGPNDRGYCIT-SWRGFATDHKLDDGDCLVFQLIQQRKF-- 197
                         4444.777788888***********5..346779***************667777779999.9*********************97777.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v ++r+
  Seita.9G356700.1.p 198 KVYIIRA 204
                         8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-20106204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-22107204IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-23110203No hitNo description
PROSITE profilePS5086311.406111205IPR003340B3 DNA binding domain
SMARTSM010192.2E-15112205IPR003340B3 DNA binding domain
PfamPF023622.1E-16113204IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MADAARYEVQ RRRQIEENKR RIEELGLRHL AAAAMPPKAK QLKLKHKARA PGAAAPPRRS  60
GRVANLPDQP DYRENVKKKI VIGPTAAERS YAIAKAKAKE LEGELRADYP TFLKTVSKYY  120
ATAFSLSLPP HFCREHLPEH GKVITLVDEE DDEFDVQYYK GPNDRGYCIT SWRGFATDHK  180
LDDGDCLVFQ LIQQRKFKVY IIRARSYLKM MS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G356700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698151.11e-157B3 domain-containing protein Os06g0194400
RefseqXP_022679065.11e-157B3 domain-containing protein Os06g0194400
SwissprotQ69V361e-60Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A368SP691e-155A0A368SP69_SETIT; Uncharacterized protein
STRINGSi039359m1e-108(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3739033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-26B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]