PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G343300.1.p
Common NameLOC101783360, SETIT_034832mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 589aa    MW: 62206 Da    PI: 6.9889
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G343300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.2e-093463831954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Seita.9G343300.1.p 346 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 383
                         664459******************************88 PP
2BELL92.54e-30204273271
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                          +elq+ kakL  +l+eV++rY++y+eq+++v++sFeavag  +a+ Yt+lA+++iS+hFr+L+d +a q
  Seita.9G343300.1.p 204 AAELQRLKAKLYAMLQEVERRYRRYREQMRAVAGSFEAVAGERAAAAYTRLASRTISKHFRSLRDGVAAQ 273
                         5799***************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-42137272IPR006563POX domain
PfamPF075269.9E-41143270IPR006563POX domain
PROSITE profilePS5007112.228324387IPR001356Homeobox domain
CDDcd000861.43E-12327388No hitNo description
SMARTSM003893.0E-9327391IPR001356Homeobox domain
SuperFamilySSF466891.92E-17328395IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-28330393IPR009057Homeodomain-like
PfamPF059207.7E-18344383IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MAHDPSLAYA DYFAAGGGVG TLVPEVDAGE DDGHLYGGVH AHHHGLDMFG AARGLVPGAM  60
AVAAASAAHG KAADALGDFA GLSEHHHHRL GGHGQAPLTS LSLHGPAEAA SMALHHHQLG  120
GALRQQHQAA AWPPSQQQGA WHLRGSRFLR PTQQLLQEFC GLPVETAGTA TAPKPPTTKP  180
ASEDGAGEGS SAPAPSAQIQ AKDAAELQRL KAKLYAMLQE VERRYRRYRE QMRAVAGSFE  240
AVAGERAAAA YTRLASRTIS KHFRSLRDGV AAQMQAVRRA LGEKDADGGV PSAGMAKGET  300
TPRLRVLDQC LRQHREYQAG VLESQPWRPQ RGLPERAVSI LRAWLFEHFL HPYPSDVDKH  360
ILARQTGLSR SQVSNWFINA RVRLWKPMVE EMYAEEMKDP QQEGGACSNA NSNANNPSSY  420
SASELGQGRG GASGEDGAER KPTRAQLVHD AGSLASVVSI GSSSRDPQNI NFGMMDGHLD  480
FGAYNDDHAT GTGHGFGGGV SLTLGLQQHA GDDPHGGVNV AFAAAPSAAH EFLFMAGGEH  540
QQQMVAAGSV HGHHQGQFGA GMEGDAASHY HRGLSAATGF QLLHDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A3e-17333391159Homeobox protein Meis2
5bng_B3e-17333391159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G343300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570600.0EU957060.1 Zea mays clone 1581614 bell-like homeodomain protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983820.10.0homeobox protein BEL1 homolog
TrEMBLK4A7H60.0K4A7H6_SETIT; Uncharacterized protein
STRINGSi034832m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.26e-71BEL1-like homeodomain 2