PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G340000.1.p | ||||||||
Common Name | LOC101771892, SETIT_039462mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 272aa MW: 29702.3 Da PI: 5.2424 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.4e-09 | 143 | 187 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+ E+ l++ + + g+ W++ +r++ + +t+ q+ s++qky+ Seita.9G340000.1.p 143 KWTEYEHRLFLAGLPFYRGN-WNAMSREFLTSKTASQIASHYQKYR 187 8*****************99.************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 22 | 27 | 75 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.36E-10 | 138 | 191 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-10 | 139 | 189 | IPR006447 | Myb domain, plants |
PROSITE profile | PS51293 | 9.107 | 139 | 191 | IPR017884 | SANT domain |
SMART | SM00717 | 7.8E-5 | 140 | 189 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-6 | 143 | 188 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-6 | 143 | 187 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MHHDGYAAAT AAPPLTLAAS PAPAPEQEPK WTRRDDKFLE LLLFTRNTVS LHIASGIIGK 60 TPVQIHQRCT FMFAELSHVL ESLEVLTPPV WDMEIAAMAA AVEEEVVPEA VVPAAPPVAA 120 RKNSAERAVG AGGDKRNKKA AEKWTEYEHR LFLAGLPFYR GNWNAMSREF LTSKTASQIA 180 SHYQKYRNRE KQREHDNCKR ASIHDITEPG IAAAFAVSGG EAAAWKGELP RSEASARGQE 240 NEPWEPIESG EDGLSPVEEF PGEDDPGTLL T* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G340000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986850.1 | 0.0 | transcription factor SRM1 | ||||
TrEMBL | K4AKN9 | 0.0 | K4AKN9_SETIT; Uncharacterized protein | ||||
STRING | Si039462m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14418 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 2e-16 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G340000.1.p |
Entrez Gene | 101771892 |