PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G330300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 642aa    MW: 66693.2 Da    PI: 6.3406
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G330300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.81.2e-872826402374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                         v++Lle+A+  ++gd+  a+++Larl+ +   a  +g p+ R a+yf+eAL+  l+     + ++ +p  +++++++ +l a+k+fsevsP
  Seita.9G330300.1.p 282 VDQLLEAAKLADAGDAFGAREILARLNYRlpaAPTAGMPLLRSAFYFKEALRLALSP----TGETPAPAVATPYDVVLKLGAYKAFSEVSP 368
                         689*************************9994555569******************9....77778888888899**************** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         +l+f+hlt+ qa+l+++ g+ r+H++Dfdi++G QW++L+q+La+R  ++++l++T+++s++s++  el+ ++e+L+ fA+elgv ++f +
  Seita.9G330300.1.p 369 VLQFAHLTCVQAVLDELGGAGRIHVLDFDIGMGEQWASLMQELAQR-CPAATLKVTALVSSASHHPLELQLIHENLSGFAAELGVFLQFAP 458
                         *********************************************9.7889**************************************** PP

                GRAS 181 lvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         +   ++++l++ eL   + g+a+aV+l +   ++         + +++L+lvk+l +kvvv v++ +d+++ +F++++++al+ +++l++s
  Seita.9G330300.1.p 459 F---NIDTLDPAELVAITgGDAVAVHLPVGSAHVA--------AMPAILRLVKRLGAKVVVSVDHGCDRTELPFAAHLFQALQSCVSLLES 538
                         9...9999*9999966666***********99998........4566******************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                         ++a   ++ ++ +k+Er+l+++ +++ v +++++  +  +    Wr  + +aGF pv+ s++a++qa++ll++++  g+rve++ g+l+l+
  Seita.9G330300.1.p 539 VDAA-RPDGDAVAKIERFLVQPGVEQRVVARHRA-AALDKPPLPWRTVFASAGFVPVQASTFAESQAEALLKRMALMGFRVEKRGGALCLY 627
                         *999.45668999**************9999998.778888999*********************************************** PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W++ +LvsvSaWr
  Seita.9G330300.1.p 628 WQRGELVSVSAWR 640
                         ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.887255620IPR005202Transcription factor GRAS
PfamPF035144.1E-85282640IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MPFAGSAREG HAGTLLLLQQ QQQQQGLAAG KFSVAAGLWE PTSVLDHRHS PSPSPPNSAS  60
TLSSPLGAAT AGVAALAGAN AKNVSPPPQA AAWPGGAPGE DAAAGGREEW QLTPLDMGLG  120
AGEGWDAAGA VLSDGAAPPG LAPDHTFLRW IIGGEDASAA MGAVMDPPVL ELDHAPSMMS  180
PAFGPNMPFA PGMEDTKAAP FGHASNLLIH HHQHHPQPHA AFFGSHPSFD AAAPPPKRHH  240
PMSSASAPKL PSFPGAAAPA GGFVPAMKPK AEAANDEAAA AVDQLLEAAK LADAGDAFGA  300
REILARLNYR LPAAPTAGMP LLRSAFYFKE ALRLALSPTG ETPAPAVATP YDVVLKLGAY  360
KAFSEVSPVL QFAHLTCVQA VLDELGGAGR IHVLDFDIGM GEQWASLMQE LAQRCPAATL  420
KVTALVSSAS HHPLELQLIH ENLSGFAAEL GVFLQFAPFN IDTLDPAELV AITGGDAVAV  480
HLPVGSAHVA AMPAILRLVK RLGAKVVVSV DHGCDRTELP FAAHLFQALQ SCVSLLESVD  540
AARPDGDAVA KIERFLVQPG VEQRVVARHR AAALDKPPLP WRTVFASAGF VPVQASTFAE  600
SQAEALLKRM ALMGFRVEKR GGALCLYWQR GELVSVSAWR C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-2631364032375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G330300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277570.0KJ727757.1 Zea mays clone pUT5701 GRAS transcription factor (GRAS33) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983723.10.0scarecrow-like protein 6 isoform X1
TrEMBLA0A368SNB30.0A0A368SNB3_SETIT; Uncharacterized protein
STRINGSi039098m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-93GRAS family protein