PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G325700.2.p | ||||||||
Common Name | LOC101755679, SETIT_035334mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 499aa MW: 51249.5 Da PI: 6.7801 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.3 | 4.2e-16 | 299 | 344 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hne Er+RRdriN+++ +L++l+P++ K +Ka++L ++++Y+k+Lq Seita.9G325700.2.p 299 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 344 *************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 18.025 | 294 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.11E-20 | 297 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.1E-18 | 299 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-13 | 299 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.72E-18 | 299 | 348 | No hit | No description |
SMART | SM00353 | 1.2E-18 | 300 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MNQCVPSWDL DDPAVVAGGG GGGLNHPVPA AGGAHRVVVS AAGTTGGAFA PVVVPMSDKY 60 YEVAELTWEK GNISSHGLLN RPAPSKYPPA APSHLQGIGG GAGAGGVAGD RETLEAVVGE 120 AAARSHFLSQ PPAVHHHAPW LGAAGGAVAR TGADALVPCA ARVVDEAAEG GDAADASRRK 180 RARVVGEDGL VCASQGSAAP GRRGESALLT LDGGCGTGAD DLCGFTTTTN NSTSLDRDDK 240 GSPDTENTSI GGGASDSRCF SRRSQRDGLC DEGENVVING DGAVRSSIST KRSRAAAIHN 300 ESERKRRDRI NQKMKTLQKL VPNSSKTDKA SMLDEVIDYL KQLQAQVQVM SRMSSMMMPM 360 AMPQLQMSVM AQMAQMAQMA QMAQGMMNMG SLAQPGYAGL TPPMMPPFVP MSWDPTAAAA 420 ATSAAGAGAG VMGTDRAPQP GAAAGAVPDA FTAFLACQAQ QNGQQPGSME AYNKMVALYQ 480 KMSQQQQQQG QPSNSSKQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 302 | 307 | ERKRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G325700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660002.1 | 0.0 | transcription factor UNE10 isoform X2 | ||||
TrEMBL | A0A368SN18 | 0.0 | A0A368SN18_SETIT; Uncharacterized protein | ||||
STRING | Si035334m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 6e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G325700.2.p |
Entrez Gene | 101755679 |