PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G323300.1.p
Common NameLOC101781338, SETIT_039427mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 284aa    MW: 29766 Da    PI: 4.5844
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G323300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76.1e-1892141255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Seita.9G323300.1.p  92 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 141
                         69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575119No hitNo description
PfamPF008472.6E-1292141IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2192150IPR016177DNA-binding domain
SMARTSM003803.8E-3692155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3292150IPR001471AP2/ERF domain
PROSITE profilePS5103223.39392149IPR001471AP2/ERF domain
PRINTSPR003671.5E-1093104IPR001471AP2/ERF domain
CDDcd000185.05E-3093151No hitNo description
PRINTSPR003671.5E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAKELQETSS SSATTTSSCT TSCCSSTVTD SSSSPPSPAA ANAAPAPRKR QAAEPEADAE  60
VGGEEEEEEE FAGKATAAKK KRKRSSEGKH PTYRGVRMRA WGKWVSEIRE PRKKSRIWLG  120
TFPTAEMAAR AHDVAALAIK GRAAHLNFPD LAEVLPRAAS AAPKDVQAAA ALAAAFESPS  180
SPSSEPGAGA TEPCHAQDEP ATKNAAAPGE AAADEAAVPP PASQSQPATP SSGVEEERQL  240
FDLPDLLLDI RDGFGCFPPM WAPLPDVEEV NAELRLEEPL LWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-18901491272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984KKRKRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G323300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3147030.0KF314703.1 Setaria italica clone SiDREB hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274158.10.0uncharacterized protein LOC101781338
SwissprotQ8LBQ73e-51ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLK4AKK40.0K4AKK4_SETIT; Uncharacterized protein
STRINGSi039427m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]