PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G319600.1.p

Common Name

LOC101768524, SETIT_036966mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 278aa MW: 30277.1 Da PI: 8.6827

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G319600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.5	4e-15	97	141	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ +qlG+g+W+ I++ + ++Rt+ q+ s+ qky Seita.9G319600.1.p 97 PWTEEEHRKFLDGLRQLGKGDWRGISKGFVTTRTATQVASHAQKY 141 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.785	90	146	IPR017930	Myb domain
SuperFamily	SSF46689	8.61E-18	91	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-18	93	145	IPR006447	Myb domain, plants
SMART	SM00717	2.9E-10	94	144	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.4E-11	95	140	IPR009057	Homeodomain-like
CDD	cd00167	3.43E-10	97	142	No hit	No description
Pfam	PF00249	3.2E-12	97	141	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDRPEEENGR KVAPVVFRLF GVDVRRVADE ELDDFGNGFE LRKISSMPNL TVNSIDPVLP 60 PGEAGDGKAY ASDDLELASR QQKRRRRKAQ ERKKGIPWTE EEHRKFLDGL RQLGKGDWRG 120 ISKGFVTTRT ATQVASHAQK YFLRQTNPGK KKRRASLFDV GIADFSDDQV PSPPNSATKP 180 APTQEIIHTD RGDVPIPSYR GFGGILGNNI QVSELTNYFE RPMAHAETSF ASMASGLETA 240 SSVNSLELSI AINNLELSIA PPALCGCGGA AGAIKVL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	87	KRRRRK
2	82	93	KRRRRKAQERKK
3	83	93	RRRRKAQERKK
4	149	153	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G319600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983632.1	0.0	transcription factor MYBS2
Swissprot	B8BI93	8e-89	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	8e-89	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	K4ADK9	0.0	K4ADK9_SETIT; Uncharacterized protein
STRING	Si036966m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	5e-32	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Seita.9G319600.1.p
Entrez Gene	101768524

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]