PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G318500.1.p
Common NameLOC101764054, SETIT_036682mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 318aa    MW: 33746.1 Da    PI: 9.9519
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G318500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.51.5e-2258147186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                         +Wt++e+laLiea+r+++e+lr+g+l++++W++v++++        +   +s +qC++k+e+l+kry++++ ++ +r+++   ++p+f  l
  Seita.9G318500.1.p  58 CWTEEETLALIEAYRDRWEALRKGNLRAADWDRVANAVtarcgrFPTATPKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFPLL 146
                         8*************************************998888788899*************************98443..47****988 PP

            trihelix  86 e 86 
                         +
  Seita.9G318500.1.p 147 H 147
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-2257148No hitNo description
PROSITE profilePS500906.09859121IPR017877Myb-like domain
SMARTSM005951.1E-566150IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSSSSSDAAR DDVVSSPDLP PLAAPVAAAA AAAAAAASSG GGIGLGGGAS GRRLPPPCWT  60
EEETLALIEA YRDRWEALRK GNLRAADWDR VANAVTARCG RFPTATPKSG VQCRHKIEKL  120
RKRYRAERSR SAGRSKGPKW PFFPLLHDLA GGGVPDPSPN AIVKIKTKGP APLASTPSPV  180
SSPSSEEGVR SRSLHGLISN GGAGSGLRFT IPKASRSKPA GVAAVKPERN GGEDDAESEA  240
MAEVADALRA VGEGFLRMEE RRLELSLQME KEWMESEMKR TQTMLDAQQL FFEAFLGKQQ  300
QHKKARHSPA SNAMEED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G318500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407270.0BT040727.1 Zea mays full-length cDNA clone ZM_BFc0120O10 mRNA, complete cds.
GenBankEU9599370.0EU959937.1 Zea mays clone 220734 mRNA sequence.
GenBankKJ7278520.0KJ727852.1 Zea mays clone pUT5897 trihelix transcription factor (THX4) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983621.10.0trihelix transcription factor ASIL1
TrEMBLK4ACS50.0K4ACS5_SETIT; Uncharacterized protein
STRINGSi036682m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.16e-27Trihelix family protein