PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G316000.1.p
Common NameLOC101757028, SETIT_034463mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family STAT
Protein Properties Length: 712aa    MW: 78609.7 Da    PI: 6.5921
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G316000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT179.26e-562293471119
                STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 
                         l+vvl+nalg+pv kd+evvasL+yad+g++veks dd+e+pLLi+ +G+e+++ +rpl+++rG+a fklkisqLsskcdn+Lfri+f+++
  Seita.9G316000.1.p 229 LEVVLINALGEPV-KDKEVVASLVYADNGTAVEKSrDDSEPPLLITSEGLEYPAISRPLPIIRGCAIFKLKISQLSSKCDNKLFRIQFSTL 318
                         79**********9.*********************9******************************************************* PP

                STAT  91 klkkypfleavskpirCisrsrntrsssl 119
                         ++++ypfl a+sk irCisr+r+ r++++
  Seita.9G316000.1.p 319 HMRRYPFLVAYSKTIRCISRTRTIRPLGS 347
                         ************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498998.27E-712163IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.101.4E-4604683IPR000980SH2 domain
SuperFamilySSF555501.57E-7607691IPR000980SH2 domain
PROSITE profilePS5000110.315613711IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MAAPESECGG GDAGYLDLRD VRVEVDPGTA RGGGGGGFAV CFWLYLSSSA RPSSVILHQV  60
TTGDGNKLPF LALGEGNRLL LFPLMTLHRE APAPASSYPW TDTTSLSSTN ECPLEKWFHI  120
GCEVTENVMR LHINGNLIAE AHLCSLSDEQ HHQDHANKIS LFGNDSKLEG YIYNIEVSSV  180
LGTIKEQHAK NPPFKLSIDY SSSDGIEEGD DGIWNIVGGK ASCRRNFILE VVLINALGEP  240
VKDKEVVASL VYADNGTAVE KSRDDSEPPL LITSEGLEYP AISRPLPIIR GCAIFKLKIS  300
QLSSKCDNKL FRIQFSTLHM RRYPFLVAYS KTIRCISRTR TIRPLGSGKR VNSATADETD  360
LLNNGQGLGN ADRVNGRLHS HGQSSVVRFH MPKFSKIEGD GMAKVVESNK ILSQNKHARK  420
MVVSKEAQDV MGTDSSTSNY DSFDSGSSWS GSDGDDIETF SDAVVFRYCL DSTYDRSKFL  480
RGAAPTFNKD DLVKLADQVS LYSGCSHHRN QILMSKRLLR EGADTWSMIS KNNERALWSS  540
AIPGIITKFT DISHSVNRGL SEQDLEVLRG IAGCGEDIGK DEFDRLWYWL YPVAASLTRD  600
KIKKLWDCTS PRWIEGLITV QEAENALRSS RELLKEPGTF VLRFPTTRSW PHPDAGNLVV  660
TYVGSDNSIH HRLLSLDSSV ARAENLQDLL LQEPELSQLG RVDRLPTAIR R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G316000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983603.10.0SH2 domain-containing protein B isoform X1
TrEMBLK4A6F90.0K4A6F9_SETIT; Uncharacterized protein
STRINGSi034463m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-158SH2 domain protein B