PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G308900.2.p | ||||||||
Common Name | SETIT_034207mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 861aa MW: 97013.6 Da PI: 7.3065 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 43 | 79 | 4 | 42 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 WT +E +++a +++G++ Wk+I++ +g ++++ ++k Seita.9G308900.2.p 43 WTNDELMCFYKAYHRHGKD-WKKISAAVG-HKSPDMVKA 79 *****************99.*********.***999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.73E-10 | 36 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.998 | 38 | 89 | IPR017884 | SANT domain |
SMART | SM00717 | 9.3E-4 | 39 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-7 | 43 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.62E-5 | 43 | 78 | No hit | No description |
SMART | SM01135 | 6.2E-29 | 490 | 591 | IPR033471 | DIRP domain |
Pfam | PF06584 | 2.5E-29 | 490 | 590 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 861 aa Download sequence Send to blast |
MGPAKVSRTI TKIRIKGYED RQQHEEVPSS VKKEKISDLG PIWTNDELMC FYKAYHRHGK 60 DWKKISAAVG HKSPDMVKAL YAMHRTFLSL PEHQATSMGF IALVTGHCNV LELSSSHRGN 120 GQTIRASGKA KKHGEATQHK VHEAPHPHGS YHAGKIPGFS PSFKKRYYGE LARNSQSHPV 180 GNRTPRIPVI VPADRNAIND ATPEFKNAMS STKRNNDKIN NDRANFSMNE CSPDGRSGIM 240 EATKGVECQA LLETNGDTEI CQTQQPLKKR RMDQTMDRGR ASKVGHETMM EVKEENKPSG 300 LLKQQMSSMF ISADDILILD VLQSLVDEPD KMSKLKINIT SNTLRKSDFT LSESKDEGHS 360 PVDLSKQGKP ITECSASKTK RKRHTKVPAE EINVVHAIDI TEGSSNSDSA RGLEDLPEST 420 ANIFCEVYPT VPREINPEIS MSRRRKMKNK MHRKKKYVMC NKGSDNVEAR KLLHCLSSEF 480 LRRWCTYEWF YSAIDFPWFM DNEFVKYMNH PYLRHISRLA RSEWSIIRSY RGKPRRFSDN 540 FLVMERKQLE DYRKEVRTYY AQLSDGSLDS LPADVARPFS IGQQVIVRHP SSRELCDGKV 600 VMVDQDCCKV QFDNPELGLD LVQDVDCMPV NWLDNLPDNV RSTLESHDVH NILEMEHVFK 660 VTPSGNRDHT INEVSIPELP ISVDITSDEQ LEVEYSVDSE RTQKESTSDG IVQSTDFPNN 720 NDDHYDQLES YCSAFVRSMQ SQAREMVDEV MQATSGGNSS QDEGAGAVNQ ATNCISPDLG 780 AVTCDSQLPS NLIMNCTATV LAIKRLADSR HPPANIAGIL QRFSAMLLPT CSENLAIYRD 840 IEKHISIITS QTVALMPRTL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 441 | 446 | SRRRKM |
2 | 442 | 453 | RRRKMKNKMHRK |
3 | 443 | 454 | RRKMKNKMHRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G308900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022678605.1 | 0.0 | protein ALWAYS EARLY 1 isoform X1 | ||||
Refseq | XP_022678606.1 | 0.0 | protein ALWAYS EARLY 1 isoform X1 | ||||
TrEMBL | A0A368SMP2 | 0.0 | A0A368SMP2_SETIT; Uncharacterized protein | ||||
STRING | Si034207m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 1e-57 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G308900.2.p |