PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G308900.1.p
Common NameSETIT_034207mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 861aa    MW: 97013.6 Da    PI: 7.3065
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G308900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-084379442
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42
                        WT +E   +++a +++G++ Wk+I++ +g ++++ ++k 
  Seita.9G308900.1.p 43 WTNDELMCFYKAYHRHGKD-WKKISAAVG-HKSPDMVKA 79
                        *****************99.*********.***999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.73E-103686IPR009057Homeodomain-like
PROSITE profilePS512939.9983889IPR017884SANT domain
SMARTSM007179.3E-43987IPR001005SANT/Myb domain
PfamPF002492.4E-74381IPR001005SANT/Myb domain
CDDcd001671.62E-54378No hitNo description
SMARTSM011356.2E-29490591IPR033471DIRP domain
PfamPF065842.5E-29490590IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MGPAKVSRTI TKIRIKGYED RQQHEEVPSS VKKEKISDLG PIWTNDELMC FYKAYHRHGK  60
DWKKISAAVG HKSPDMVKAL YAMHRTFLSL PEHQATSMGF IALVTGHCNV LELSSSHRGN  120
GQTIRASGKA KKHGEATQHK VHEAPHPHGS YHAGKIPGFS PSFKKRYYGE LARNSQSHPV  180
GNRTPRIPVI VPADRNAIND ATPEFKNAMS STKRNNDKIN NDRANFSMNE CSPDGRSGIM  240
EATKGVECQA LLETNGDTEI CQTQQPLKKR RMDQTMDRGR ASKVGHETMM EVKEENKPSG  300
LLKQQMSSMF ISADDILILD VLQSLVDEPD KMSKLKINIT SNTLRKSDFT LSESKDEGHS  360
PVDLSKQGKP ITECSASKTK RKRHTKVPAE EINVVHAIDI TEGSSNSDSA RGLEDLPEST  420
ANIFCEVYPT VPREINPEIS MSRRRKMKNK MHRKKKYVMC NKGSDNVEAR KLLHCLSSEF  480
LRRWCTYEWF YSAIDFPWFM DNEFVKYMNH PYLRHISRLA RSEWSIIRSY RGKPRRFSDN  540
FLVMERKQLE DYRKEVRTYY AQLSDGSLDS LPADVARPFS IGQQVIVRHP SSRELCDGKV  600
VMVDQDCCKV QFDNPELGLD LVQDVDCMPV NWLDNLPDNV RSTLESHDVH NILEMEHVFK  660
VTPSGNRDHT INEVSIPELP ISVDITSDEQ LEVEYSVDSE RTQKESTSDG IVQSTDFPNN  720
NDDHYDQLES YCSAFVRSMQ SQAREMVDEV MQATSGGNSS QDEGAGAVNQ ATNCISPDLG  780
AVTCDSQLPS NLIMNCTATV LAIKRLADSR HPPANIAGIL QRFSAMLLPT CSENLAIYRD  840
IEKHISIITS QTVALMPRTL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441446SRRRKM
2442453RRRKMKNKMHRK
3443454RRKMKNKMHRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G308900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678605.10.0protein ALWAYS EARLY 1 isoform X1
RefseqXP_022678606.10.0protein ALWAYS EARLY 1 isoform X1
TrEMBLA0A368SMP20.0A0A368SMP2_SETIT; Uncharacterized protein
STRINGSi034207m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-57DNA binding