PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G305800.1.p
Common NameLOC101756077, SETIT_038537mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 422aa    MW: 45166.5 Da    PI: 6.6759
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G305800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.1e-30179237259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  Seita.9G305800.1.p 179 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 237
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.742173239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-31173239IPR003657WRKY domain
SuperFamilySSF1182904.45E-26176239IPR003657WRKY domain
SMARTSM007746.3E-37178238IPR003657WRKY domain
PfamPF031061.4E-25180237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MCDFFWLSPA DQGDLSDVVR ASLQQQPPSH HRLPLGTPAP AVRSHGSLGS HHLPEEEEEL  60
LVHGNGGMGL MVSSSIAGCD RALYPQHHHP EAEGLLIPQQ LMSSSSFVVE LREDDVANTP  120
AVLDELGLED MAMAPHPDHA PSIKRRKSQT KKVVCIPAPV APPPGVGGRP STSGEVVPSD  180
LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR TDPSMLVITY TSDHNHPWPT  240
HRNALAGSIR PAAAATSSSS SPSAKQSHHH QRRSAAAAAV TDPTPPHRHA SDVVVADNST  300
TPAGSITASI HNHQLLLKKE VLDMDSLEPA QEDAAAGHDL VVGGMIADMD GALNVLCASS  360
FHSKKQQQQH ATADHLERLP EEEDKRLLLD RDPFSFSFLD WVGASFGVAG EAAAANKGGY  420
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23147240280Disease resistance protein RRS1
5w3x_D2e-23147240280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G305800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0187271e-80AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence.
GenBankAP0149661e-80AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126181e-80CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKC9546101e-80KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983519.10.0probable WRKY transcription factor 14
TrEMBLK4AI300.0K4AI30_SETIT; Uncharacterized protein
STRINGSi038537m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.18e-54WRKY DNA-binding protein 35