PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G270800.1.p
Common NameSETIT_039273mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 410aa    MW: 43788.6 Da    PI: 5.0606
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G270800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.62.1e-103878141
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                        k ien  +r  t+ +Rr g+  K + L +LC++e++++ f 
  Seita.9G270800.1.p 38 KLIENPKKRRATYKNRRDGLVQKTSQLATLCGVEALLVCFD 78
                        569**********************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.7553077IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-153080IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-83087IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-53252IPR002100Transcription factor, MADS-box
CDDcd001202.05E-153280No hitNo description
PfamPF003192.1E-134080IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-55267IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MVSGHPCLIC DGRFARQQAS DTDLEQTTTM PRGKLGMKLI ENPKKRRATY KNRRDGLVQK  60
TSQLATLCGV EALLVCFDPK PAGSGQDGGG GGAAAATTWP ANREDVLKLI EKYRETPADK  120
IRHSFNAATY YQEELAKQQR KLLKIEQCGP DMLSLQDCRL ADLSTADLGT LLVALDETLR  180
KAQQRIVALG GHLDDDGGDV LPAATAMVTA PHAVPMPLPL AEYSSFDLAF AMPDAGSMVT  240
QYDYPPHDMM PLPQPVPLQP PCLAYHQMPL PSYTFQMPPA TTTLIAPHDL GMTGTMDFPT  300
FFTNFANGSA TAAGFYDDFM LGFDATGGGV YVDDYVAAGQ ADFAAGHAGT GYQLEHRMPA  360
GVWAPVSRMN NNPGPMDAAA FQEGNDLAGL PGSSCSSNGA IFQGGFQKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G270800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK4AK500.0K4AK50_SETIT; Uncharacterized protein
STRINGSi039273m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.12e-11AGAMOUS-like 38