PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G270200.2.p | ||||||||
Common Name | SETIT_035052mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GRAS | ||||||||
Protein Properties | Length: 479aa MW: 52925.1 Da PI: 5.7291 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 431.5 | 6.6e-132 | 108 | 477 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++++++c +av+++d +++ l+++l +l+s +gdpmqRl ay++e++ arl++s+s lyk+l+++e + se +++++l++e++P++ Seita.9G270200.2.p 108 LKQVIIACGKAVAENDVFATELLISELGQLVSVSGDPMQRLGAYMLEGIVARLSSSGSMLYKSLKCKEPT---GSELMSYMHLLYEICPFY 195 57899****************************************************************9...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 kf+++ aN aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp +RiTg+++++s + l +g+rL+++A+++g+pfefn+ Seita.9G270200.2.p 196 KFGYMSANGAIAEAIKGENFVHIIDFQIAQGSQWITLIQALAARPGGPPYIRITGIDDSNSAyaRGGGLDIVGRRLHSVAQSCGLPFEFNA 286 **********************************************************988899999************************ PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 v + ++++le+L+v+pgE ++Vn+++qlh+++desvs+e++rd++++++ks++P+vv++veqe+++n+++F+ r +e+l+yy+a+f+s+ Seita.9G270200.2.p 287 -VPAASHEVQLEHLAVRPGEIIVVNFAYQLHHVPDESVSIENHRDRIIRMIKSINPRVVTLVEQESNTNTAPFFPRYMETLNYYTAMFESI 376 .7999************************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 ++ lpr+++ r++ E+++++r+ivn++aceg er+erhe ++kW++r+ +aGF+p+pls+ +++++++llr ++s y++ee++g l+lgW Seita.9G270200.2.p 377 DVALPRDDRRRMSAEQHCVARDIVNLIACEGPERVERHELFGKWKARFAMAGFRPYPLSSVVNNTINTLLRSYNSC-YNLEERDGVLYLGW 466 **************************************************************************55.************** PP GRAS 363 kdrpLvsvSaW 373 k+r Lv+ SaW Seita.9G270200.2.p 467 KNRVLVVSSAW 477 *********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.981 | 82 | 459 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-129 | 108 | 477 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MYCTLESSSA NGIYPAQSST SSHSISPLSG SPLSQHDGHS DHTYSSPPSA SCLTEVADLQ 60 IKLKELENVI LGPELDITSD SPESFLQANV QLRPDNWRQL LGIDAGDLKQ VIIACGKAVA 120 ENDVFATELL ISELGQLVSV SGDPMQRLGA YMLEGIVARL SSSGSMLYKS LKCKEPTGSE 180 LMSYMHLLYE ICPFYKFGYM SANGAIAEAI KGENFVHIID FQIAQGSQWI TLIQALAARP 240 GGPPYIRITG IDDSNSAYAR GGGLDIVGRR LHSVAQSCGL PFEFNAVPAA SHEVQLEHLA 300 VRPGEIIVVN FAYQLHHVPD ESVSIENHRD RIIRMIKSIN PRVVTLVEQE SNTNTAPFFP 360 RYMETLNYYT AMFESIDVAL PRDDRRRMSA EQHCVARDIV NLIACEGPER VERHELFGKW 420 KARFAMAGFR PYPLSSVVNN TINTLLRSYN SCYNLEERDG VLYLGWKNRV LVVSSAWC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-59 | 110 | 477 | 6 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G270200.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ858766 | 0.0 | HQ858766.1 Zea mays clone UT1682 GRAS transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983228.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_004983229.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | K4A9B3 | 0.0 | K4A9B3_SETIT; Uncharacterized protein | ||||
STRING | Si035053m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G270200.2.p |
Publications ? help Back to Top | |||
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