PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G267300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 305aa    MW: 33367.4 Da    PI: 6.0511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G267300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.95.1e-15102153155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  Seita.9G267300.1.p 102 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 153
                         79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-14100157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.11E-15100157No hitNo description
SuperFamilySSF474596.8E-18101171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.412101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-12102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00144229297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MALLDAVVYP QPQGQFGYGH RDASYGLPWS TSDATGFGEW DPFLLATLVQ NAEEWGEEVG  60
SKASPEHDAA PSSAAGPSPA TTPKRKRRRA KVIKNEEEIE SQRMTHIAVE RNRRRQMNEY  120
LAVLRSLMPP SYAQRGDQAS IVGGAINYVR ELEQLLQSLE VQRSLKEHNS NSSNPFASFF  180
SFPQYFATSA THCDAGNHTI EEDTSARRTP SSSVTADIEV SMVEGHASVK VQAPRRPRQL  240
LRLAAGLQQL GLTILHLNVS TAGAMVMYSL SLKVEDECKL SSVEEIAAAV HEILGRVQEE  300
AGFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388KRKRRR
28488RKRRR
3102113RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G267300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588092e-68AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983211.10.0transcription factor bHLH96
SwissprotQ9C7T42e-73BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A368SMQ60.0A0A368SMQ6_SETIT; Uncharacterized protein
STRINGSi038653m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]