PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G259300.1.p

Common Name

LOC101771077, SETIT_035787mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 434aa MW: 45835.3 Da PI: 7.9512

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G259300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.4e-40	91	150	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ Seita.9G259300.1.p 91 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKHA 150 78999*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-31	87	148	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-32	92	149	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	95	149	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	97	133	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MMAECRGGDC LIKLFGKTIP VPEAADAAKE SGSSSSSTES DAPENAHQEA SDPSPQPEVV 60 DAEDPKSSPE TTQQPDAAGD VASQREKLKK PDKVLPCPRC NSMDTKFCYF NNYNVNQPRH 120 FCKNCQRYWT AGGAMRNVPV GAGRRKNKHA VAASHFLQRV RAALPAAGDP LKTNGTVLSF 180 GGHGPPPALH DLTEQVNHLQ EKLLIPARKT SNPSPAVGPC SEGSSSTDDM THGGGIKEKS 240 STVDKPANGA QYPAGMNGAA VWPYSCAPPP AYFSSGIAIP IYPAAPGYWG CMVPGAWSLP 300 WPVQPPSQGL SSPTSAPSVS SSGPDSLTLG KHPREVDEGR SSAHGSGKVW APKTIRIDDA 360 DEVARSSIWS LIGIKGDKKR DDADHAVGHK HGTVFEPKLE VNKAAKPGMI TRSPFLHTNP 420 VALTRSVTFQ EGS*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MMAECRGGDC LIKLFGKTIP VPEAADAAKE SGSSSSSTES DAPENAHQEA SDPSPQPEVV  60
DAEDPKSSPE TTQQPDAAGD VASQREKLKK PDKVLPCPRC NSMDTKFCYF NNYNVNQPRH  120
FCKNCQRYWT AGGAMRNVPV GAGRRKNKHA VAASHFLQRV RAALPAAGDP LKTNGTVLSF  180
GGHGPPPALH DLTEQVNHLQ EKLLIPARKT SNPSPAVGPC SEGSSSTDDM THGGGIKEKS  240
STVDKPANGA QYPAGMNGAA VWPYSCAPPP AYFSSGIAIP IYPAAPGYWG CMVPGAWSLP  300
WPVQPPSQGL SSPTSAPSVS SSGPDSLTLG KHPREVDEGR SSAHGSGKVW APKTIRIDDA  360
DEVARSSIWS LIGIKGDKKR DDADHAVGHK HGTVFEPKLE VNKAAKPGMI TRSPFLHTNP  420
VALTRSVTFQ EGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G259300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582399	1e-125	KC582399.1 Sorghum bicolor dof2 protein (dof2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983151.1	0.0	cyclic dof factor 1
TrEMBL	K4AA81	0.0	K4AA81_SETIT; Uncharacterized protein
STRING	Si035787m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-61	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Seita.9G259300.1.p
Entrez Gene	101771077