PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G247700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 390aa    MW: 44231.6 Da    PI: 4.8518
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G247700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind92.35.5e-29471652103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT..TEEE---SSBTTTT................ CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY..gFkkvkdeekksks................ 74 
                         Fl+k+++++ed++++ ++sws+ gnsfvv+d++ fa+++Lp+ Fkhsnf+SFvRQLn+Y  g +   + +                     
  Seita.9G247700.1.p  47 FLTKTFDLVEDQATDAVVSWSRAGNSFVVWDPHVFADTLLPRLFKHSNFSSFVRQLNTYldGTRYWMKYKL---Cytdtpiririrdtgfr 134
                         9**********************************************************653333333222...12345788888877766 PP

                         ..XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
        HSF_DNA-bind  75 ..kekiweFkhksFkkgkkellekikrkkse 103
                           +++ weF+++ F +g+++ll++ikr+k +
  Seita.9G247700.1.p 135 kvDPDRWEFANEGFLRGQRHLLKTIKRRKPS 165
                         5449************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-3443162IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-4743162IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-3043162IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-124770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.0E-2847162IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-128597IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-1298110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDPSAAAAGI VKEELLEQQP LQDGVAGGGR DAPRPMEGLH EVGPPPFLTK TFDLVEDQAT  60
DAVVSWSRAG NSFVVWDPHV FADTLLPRLF KHSNFSSFVR QLNTYLDGTR YWMKYKLCYT  120
DTPIRIRIRD TGFRKVDPDR WEFANEGFLR GQRHLLKTIK RRKPSSAVPQ SHQQQAPASC  180
LEVGEFGFEE EIDRLKRDKN ILITEVVKLR QEQQTTKDHV RAMEERLRVA EQKQVQMMGF  240
LARAMRNPEF FQQLVQQQDK RKELEDAISK KRRRPIDNTP FYSPGETSQT EPLDSQFVFD  300
SGVLDGLSEP GMPELENLAV NIQELGKGTT DSVKMDQANG QSELNDDFWA ELLIEDFGDK  360
AGQSELEARP EDVDDLAQQL GYLSSSSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-22211623129Heat shock factor protein 1
5d5v_B2e-22211623129Heat shock factor protein 1
5d5v_D2e-22211623129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161LKTIKRR
2259273KRKELEDAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G247700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983076.10.0heat stress transcription factor A-2c isoform X1
RefseqXP_004983077.10.0heat stress transcription factor A-2c isoform X1
RefseqXP_022679239.10.0heat stress transcription factor A-2c isoform X1
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A368SK940.0A0A368SK94_SETIT; Uncharacterized protein
STRINGSi036304m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-111heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]