PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G238800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 262aa MW: 29787.4 Da PI: 7.0189 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.2e-08 | 125 | 171 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 WT++E llv++v ++G g W+ + + Rt+ ++k++w ++ Seita.9G238800.1.p 125 HWTQDEVRLLVNGVSEYGVGKWRDVRTKYFltSIRTPVHLKDKWKNL 171 6**************************9999988***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.744 | 118 | 176 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-14 | 120 | 200 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-6 | 122 | 174 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-6 | 125 | 171 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-11 | 125 | 173 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.51E-18 | 126 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MESEAMDLEL QLLWKGPSNE KHLDECVGVF DHYSHQIENQ FHSLNVKDGE VADEETNIDD 60 LDIEDYMDPS MLGCFFPNGS LGHGRRGPRR TSTSVRVVKF TPNFGLQEPS TSGGRKHGGR 120 KNNDHWTQDE VRLLVNGVSE YGVGKWRDVR TKYFLTSIRT PVHLKDKWKN LVKACKKESG 180 RMLLPLEQSL IERIMEIDDY DPYPKQSNSA PDRLAPTTSP DLPSVLPPAR WSVVKARTER 240 PSMHKSKNNN QRTSIDTNKD L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G238800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A368SK04 | 0.0 | A0A368SK04_SETIT; Uncharacterized protein | ||||
STRING | Si039881m | 1e-103 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5225 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.1 | 1e-11 | TRF-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G238800.1.p |