PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G238700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 227aa MW: 26181.1 Da PI: 10.0864 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 141 | 188 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 WT+ E +llv++v ++G g+W++ ++ Rt+ ++k++w+++l Seita.9G238700.1.p 141 HWTAKEVKLLVHGVSKFGVGRWSKLKKKYFktSVRTAVNLKDKWRNLL 188 5*************************99998967************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.177 | 134 | 192 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.74E-15 | 136 | 213 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-8 | 138 | 190 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-12 | 141 | 189 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.8E-7 | 141 | 188 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.14E-19 | 142 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEQPEISFCS PEMEQTGLFW LPVEEAEQGL DGLLGDLQLS LASSTACGLQ MENYRARDDD 60 AVLILKLLEE PRDEADLDEW LSGGLHESPL QDTVSHHQME CRRSGRRGTR KRRTSPWDTL 120 FFGGIPLRRA GKYITRKNNS HWTAKEVKLL VHGVSKFGVG RWSKLKKKYF KTSVRTAVNL 180 KDKWRNLLRA YQKNIQKYTL LDLEPPLVEQ IRKLAVKHPY PKRRHS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 113 | TRKRRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G238700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986549.1 | 1e-168 | uncharacterized protein LOC101754485 | ||||
TrEMBL | A0A368SLP3 | 1e-167 | A0A368SLP3_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ia01842.1.p | 1e-130 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5225 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 9e-16 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G238700.1.p |