PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G222900.1.p | ||||||||
Common Name | LOC101761470, SETIT_036835mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 32508.6 Da PI: 6.5078 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.1 | 2.5e-51 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF P+deelv++yL++kv+++++ ++ evd++ ePw+Lp +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ Seita.9G222900.1.p 10 LPPGFRFYPSDEELVCFYLRNKVANQRVAS-GTLVEVDLHAREPWELPDVAKLTAEEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRV 99 79*************************888.88***************77777889*********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 v++ ++elvg++ktLvfy+grap+g+kt Wvmhe+rle Seita.9G222900.1.p 100 VHEPaTRELVGMRKTLVFYRGRAPNGQKTGWVMHEFRLE 138 **9878889***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.72 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MGLREMDSAL PPGFRFYPSD EELVCFYLRN KVANQRVASG TLVEVDLHAR EPWELPDVAK 60 LTAEEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDRVV HEPATRELVG MRKTLVFYRG 120 RAPNGQKTGW VMHEFRLETP NSPPKEDWVL CRVFNKMKLS SEGEEAGSSG IHNGHTATVS 180 AEPSSPPPAF LGSLPDPAAA PADRFYQQRQ VTTGSGSSSG ALLMNLQAML QQGSSCFLDY 240 CSPVVHHGVA VGAPHNAGCG DDAAVAMALG HVGFEEHGLG EIEMEYAQAQ GGCGLYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-51 | 1 | 156 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-51 | 1 | 156 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-51 | 1 | 156 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-51 | 1 | 156 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-51 | 1 | 156 | 4 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-51 | 1 | 156 | 4 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G222900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC181492 | 1e-94 | KC181492.1 Urochloa ruziziensis clone 214913 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982866.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q9FWX2 | 1e-59 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
Swissprot | Q9S851 | 5e-60 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | K4AD78 | 0.0 | K4AD78_SETIT; Uncharacterized protein | ||||
STRING | Si036835m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 4e-83 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G222900.1.p |
Entrez Gene | 101761470 |