PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G222100.1.p | ||||||||
Common Name | LOC101759861, SETIT_040527mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 285aa MW: 30624.2 Da PI: 5.7404 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.8 | 2.8e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++lv +++q+G ++W++ +r g+ R++k+c++rw +yl Seita.9G222100.1.p 14 RGAWSPEEDQRLVAYIRQHGHPNWRALPRQAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47 | 5.8e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E+ l+v+++ +lG++ W++Ia+ ++ gRt++++k+ w+++ Seita.9G222100.1.p 67 RGNFSADEEALIVRLHLELGNR-WSAIAAQLP-GRTDNEIKNVWHTH 111 89********************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.045 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.81E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.75E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.707 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.9E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.14E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MGRAPCCEKE GLRRGAWSPE EDQRLVAYIR QHGHPNWRAL PRQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF SADEEALIVR LHLELGNRWS AIAAQLPGRT DNEIKNVWHT HIKKRLEDDA 120 EANAAAAGGG RPKQQKARKS KPAAAAKKAT AAAAAVSDSS EQQPFTTASP GLSSSVSSGE 180 TTFSTATEST AAVSSGDNAA TTSASPQPGA AKAEMEMESF SSAEFPPIDE SFWSSPDVVD 240 MGLGAMDEEL GLAGPPSLST RDEDMEFWLK MLLEAGDMRD LSVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G222100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679408 | 1e-166 | HF679408.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB2 protein. | |||
GenBank | JQ255478 | 1e-166 | JQ255478.1 Saccharum hybrid cultivar Co 86032 MYB46 (MYB46) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982863.1 | 0.0 | transcription factor MYB4 | ||||
TrEMBL | K4ANN0 | 0.0 | K4ANN0_SETIT; Uncharacterized protein | ||||
STRING | Si040527m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-70 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G222100.1.p |
Entrez Gene | 101759861 |