PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G206300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 253aa    MW: 25301.4 Da    PI: 9.2727
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G206300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof103.51.2e-3281135559
              zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 
                          ++cprC+s+ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr++++
  Seita.9G206300.1.p  81 PRQCPRCQSANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNRR 135
                         679**********************************************976554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088426.06882136IPR003851Zinc finger, Dof-type
PfamPF027014.4E-3082134IPR003851Zinc finger, Dof-type
PROSITE patternPS01361084120IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-2187133IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MPSSFLASAS SSASSPLSYL IPAASRPPPP PLVMGQGYSV DGLAGVPTGG VVVDATSAAA  60
VAPPRPGARN PGHPPLPRPP PRQCPRCQSA NTKFCYYNNY SRTQPRYLCK ACRRHWTEGG  120
TLRDVPVGGG RKNRRGGSKA GAAAAKASAS ASTSAAAAAA TQGGSVAVGA DTFPDLLRQL  180
MQFQPTAPAG GGYAIDLSAW QQMAAATAPP QGAGDVSALG GAAAAAAEAN CGALQYWAGW  240
QPDDMPGLDG PC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G206300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279851e-115KJ727985.1 Zea mays clone pUT6101 C2C2-DOF transcription factor (DOF13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982733.11e-178dof zinc finger protein 4
TrEMBLA0A368SIQ31e-176A0A368SIQ3_SETIT; Uncharacterized protein
STRINGSi040117m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.16e-23TARGET OF MONOPTEROS 6