PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G203700.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C3H

Protein Properties

Length: 319aa MW: 34938.9 Da PI: 7.8614

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G203700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.8	3.6e-13	67	91	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+a+tG Ck+G++CkF+H++ Seita.9G203700.1.p 67 EPVCSFYAKTGKCKFGANCKFNHPM 91 789********************95 PP
2	zf-CCCH	37.3	4.4e-12	141	166	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG+ C+F+H+ Seita.9G203700.1.p 141 PGEVDCSFYMKTGSCKYGSICRFNHP 166 57899********************9 PP
3	zf-CCCH	27.3	6.4e-09	215	234	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 f+++tG+Cky +CkF+H++ Seita.9G203700.1.p 215 FYMKTGFCKYSQKCKFHHPM 234 9*****************95 PP
4	zf-CCCH	35.4	1.9e-11	265	288	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C f++r+GtC+yG+ CkF H+p Seita.9G203700.1.p 265 EACAFYMRSGTCRYGAHCKFDHPP 288 78********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	16.277	64	92	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-7	64	91	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.16E-6	64	92	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-10	67	91	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-5	69	89	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.7E-6	140	167	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.788	140	168	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-9	142	166	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.22E-5	144	168	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-4	146	165	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.183	207	235	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7	211	234	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-6	214	234	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.4E-4	215	233	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.197	261	289	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-6	261	288	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.58E-6	264	289	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.4E-5	265	286	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.7E-9	265	288	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MYWNRHPWLC GSDGVTVKDD GPGHRKSGWF LHEGGWLAPY QCQHSIEPPP FHSLITDSAI 60 LPVRPSEPVC SFYAKTGKCK FGANCKFNHP MPSVIAKETI YTATTDAAAH IGAADDLVPA 120 KMHAPTASSE AHNPKGLPIR PGEVDCSFYM KTGSCKYGSI CRFNHPYRPV VDIALMAPLV 180 QTTLPTPAPI MSAPMLNPAA NILQSFDFHV THVPFYMKTG FCKYSQKCKF HHPMNRSEPG 240 ANGNWDPEQP VTLTLAGLPR RESAEACAFY MRSGTCRYGA HCKFDHPPPQ EAISKLQAAG 300 KEDEEKKEGE AKEGSVVP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G203700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679170.1	0.0	zinc finger CCCH domain-containing protein 8 isoform X1
Swissprot	Q5ZDJ6	1e-97	C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBL	A0A368SIL4	0.0	A0A368SIL4_SETIT; Uncharacterized protein
STRING	Si000968m	1e-171	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5816	37	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	3e-57	floral homeotic protein (HUA1)

Link Out ? help Back to Top
Phytozome	Seita.9G203700.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhu RS,Xu ZF,Lin MC Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8. J Chem Phys, 2004. 120(14): p. 6566-73 [PMID:15267548]