PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G192000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 692aa    MW: 72875.4 Da    PI: 7.147
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G192000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix483.4e-157583487
            trihelix 34 vskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                        v++k++e+g++rs+k+Ckek+en++k+yk++ke++ +r  ++ +t+++f+qlea
  Seita.9G192000.1.p  7 VGRKLAEKGYTRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQLEA 58
                        899*********************************97..56668*******85 PP
2trihelix110.21.3e-34366451187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Seita.9G192000.1.p 366 RWPKAEVHALIQLRSNLDTRYQEAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 451
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-10759No hitNo description
SMARTSM007170.0078363425IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-4364422IPR009057Homeodomain-like
PfamPF138377.1E-24365452No hitNo description
CDDcd122031.25E-29365430No hitNo description
PROSITE profilePS500907.155365423IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MTIDAVVGRK LAEKGYTRSA KKCKEKFENV HKYYKRTKES RAGRNDGKTY RFFTQLEALH  60
GTGGAAQAAS FVPPATSVGL SSSGAARPSA LRVPAEPPPA VAIGGAGMPM ALGNQMSFST  120
SNTEDYSDEE DSDDEGTQEL GGGADERGKR KRVSEGGAAA GGSGSGSGSG SGKMMRFFEG  180
LMKQVMERQE AMQQRFLEAI EKREQDRMIR EEAWRRQEMT RLAREQEILA QERAMAASRD  240
AAVLSFIQKI TGQTIPMPSI AAPTINAMPP PSHPRPPPPQ PHPTPIASAS PAATPAPAQP  300
PASQPPPAQQ PQPSLPPQRS PMPATPQTPA PPQQQSTDIV MTPAETAAHA DTPGYDGSGG  360
GATSSRWPKA EVHALIQLRS NLDTRYQEAG PKGPLWEEIS AGMRRLGYNR NAKRCKEKWE  420
NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYRNKAALS SSGAGAGPAA VHASSAPSTQ  480
APETVKVTAA APISQTPPPP TLPSQSSQHA AKNGGGSNAA AGSGNGNGGG ASEHGTSGGG  540
SGGMQAQASN GSVAASRFFG DGGGGGSASA AKKPEDIMKE MMEQRPQPQA VVSGYNRIDG  600
ADSDNIDEDE DDYDDDDDDE DDVDGNKMQY EIQFQQRQHH HHHHQQPQQQ HQNVVRPNAG  660
GGGAGNPPGT TAPSTAAAAT TTAGSFLGMV Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G192000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612051e-172BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698336.10.0LOW QUALITY PROTEIN: trihelix transcription factor GTL1
SwissprotQ391179e-48TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A368SJZ60.0A0A368SJZ6_SETIT; Uncharacterized protein
STRINGOPUNC10G14260.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-53Trihelix family protein