PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G178900.1.p | ||||||||
Common Name | LOC101754183, SETIT_036311mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 363aa MW: 36026.1 Da PI: 8.2221 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.8 | 2.7e-39 | 43 | 103 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+ Seita.9G178900.1.p 43 PEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 103 67899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 7.6E-33 | 45 | 101 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-26 | 47 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.609 | 47 | 101 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 49 | 85 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MASSTPVAAG DDAVGTRKGG TGGSGGAAPP PPATQQQQPP PPPEQGLRCP RCDSPNTKFC 60 YYNNYSLSQP RHFCKTCRRY WTKGGALRNV PVGGGCRKNK RSRSAAAAAA ASRLSLNLPV 120 EGVGGDQQAA RLGFLGATGG APVASSPIGG GGPAADYQQA AGGAVGMMAL PRLHALGVGQ 180 YVPFGEWPSG AGGDISGGGG GGHAMSGGGA HGGAVSSNIA SSIESLSFIN QDLHWKLQQQ 240 RLATMFLGPP PPPPPTSSAS HIDGAPAAAP AHIGGAFLQM AGPPGMESTM PAATSWFMDS 300 SYAVLPSPHA HANNTAAAAI TAAATTTNCN VGRSSGGDDD DAANCGSAIP SWGDMSTFAM 360 LP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G178900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU947524 | 4e-92 | EU947524.1 Zea mays clone 346044 mRNA sequence. | |||
GenBank | KJ726977 | 4e-92 | KJ726977.1 Zea mays clone pUT3678 C2C2-DOF transcription factor (DOF32) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982507.1 | 0.0 | dof zinc finger protein DOF5.7 | ||||
TrEMBL | K4ABQ4 | 0.0 | K4ABQ4_SETIT; Uncharacterized protein | ||||
STRING | Si036311m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 1e-31 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G178900.1.p |
Entrez Gene | 101754183 |