PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G174900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 728aa    MW: 82374.1 Da    PI: 6.8075
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G174900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS333.53.8e-1023537191374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++cA+avs ++++la+a+L+ +++++s +gd +qRla++++  L+arla+++ +ly++l ++  +    +  l++    ++++P+ 
  Seita.9G174900.1.p 353 LRTLLIHCAQAVSVNNHTLASAILNIIRKNCSISGDDTQRLASCLADCLEARLAGTGCQLYQKLVTKCRN---AVGILKV----FQLCPFQ 436
                         6789*********************************************************999988887...4444444....589**** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                            +   N++Il+  +g+ +vHiiDf+i +G+QWp+L+++La+R++gpp++RiTg++ p++g    ++  +tg+ La++A+ + vpfe++ 
  Seita.9G174900.1.p 437 MAPNYFSNKTILDVSKGKPKVHIIDFGICYGFQWPSLFEQLAKRENGPPKVRITGIELPQPGfrPDQMNTNTGHLLAEYASMFSVPFEYHG 527
                         *************************************************************9*88888999******************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +++++e++++e+++++++++l+Vn+ +++++l de+vs++s+r++vL++++ ++Pkv+v+   + +++++ Fl+rf e +++ysalfd l
  Seita.9G174900.1.p 528 -ITSKWETIRIEDFHIEEDDVLIVNCLFRMKNLGDETVSINSARNRVLNTIRMMKPKVFVHGVVNGSYSTPFFLTRFKELMYHYSALFDIL 617
                         .799*************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ++ +pr++e r+ +Er +    i nv+aceg++r+er e+++kW++r  +aG++++pl+ +++k+ + ++ ++++d y v e++++l+lgW
  Seita.9G174900.1.p 618 DKIVPRDNESRMIIERDIYLCTILNVIACEGSDRIERPESFKKWKSRNLKAGLEQLPLNPDIVKETRDIVGQYHKD-YVVGEDDQWLLLGW 707
                         **************************************************************************77.************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         k+r L ++S W+
  Seita.9G174900.1.p 708 KGRILKAISTWK 719
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575124No hitNo description
PROSITE profilePS5098557.994327700IPR005202Transcription factor GRAS
PfamPF035141.3E-99353719IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MEFNGKSSSN FEDFPSSISS TSGCYALSQK SVDPADESND LELFLHPPSF MNYYPPVSST  60
FNDHGHITLN NSYPSKIYGP QCCEVSSNAA LDWYGTSVAG SSKSSWINSD ITLNYINKLL  120
MQEDSDGRVK LHHGENALRD VEEPFYKLLG QNSSAYPLLP LRSCDYPNNL DGCIDKSWQS  180
CSSCSVAIDS SNNHSNHNLQ AFEAPWSLSD IVKETNHLTQ GTNNMEHGLN IDGLSIAEKR  240
SRDNKSLQVN VANTSMNASF EVQCQNYPRT EGFYLLEGRS SKQLAISFSR PTRDEMFDRV  300
LLFSEHKPTD EGIVLREMMT SKSTRNSQND QERTSARRRT RGKKQEKKEV VDLRTLLIHC  360
AQAVSVNNHT LASAILNIIR KNCSISGDDT QRLASCLADC LEARLAGTGC QLYQKLVTKC  420
RNAVGILKVF QLCPFQMAPN YFSNKTILDV SKGKPKVHII DFGICYGFQW PSLFEQLAKR  480
ENGPPKVRIT GIELPQPGFR PDQMNTNTGH LLAEYASMFS VPFEYHGITS KWETIRIEDF  540
HIEEDDVLIV NCLFRMKNLG DETVSINSAR NRVLNTIRMM KPKVFVHGVV NGSYSTPFFL  600
TRFKELMYHY SALFDILDKI VPRDNESRMI IERDIYLCTI LNVIACEGSD RIERPESFKK  660
WKSRNLKAGL EQLPLNPDIV KETRDIVGQY HKDYVVGEDD QWLLLGWKGR ILKAISTWKP  720
NESYDGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-413577198375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G174900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685405.10.0scarecrow-like protein 9
TrEMBLA0A368SHN00.0A0A368SHN0_SETIT; Uncharacterized protein
STRINGSi040221m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117882640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-146GRAS family protein