PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G171200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 396aa    MW: 44364.1 Da    PI: 6.0563
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G171200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.7e-1499144147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg WT+eEd  l ++ +q+G++ W+ +ar+++  Rt+kq ++rw ++
  Seita.9G171200.1.p  99 RGQWTPEEDTMLQELMEQHGKRAWSDVAREFP-DRTGKQGRERWINH 144
                         89******************************.***********997 PP
2Myb_DNA-binding48.61.8e-15161202245
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++WT++E++ lv+++k++G++ W +Iar+++ gR ++++k+ w+
  Seita.9G171200.1.p 161 MAWTEDEELMLVKYHKKFGKK-WVKIARHIP-GRPENSIKNQWY 202
                         58*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.29594149IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-1696148IPR009057Homeodomain-like
SuperFamilySSF466899.36E-2497201IPR009057Homeodomain-like
SMARTSM007175.6E-1098147IPR001005SANT/Myb domain
PfamPF002491.8E-1299144IPR001005SANT/Myb domain
CDDcd001677.29E-12102144No hitNo description
PROSITE profilePS5129412.977155209IPR017930Myb domain
SMARTSM007171.5E-12159207IPR001005SANT/Myb domain
PfamPF002491.4E-13161202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-15162202IPR009057Homeodomain-like
CDDcd001671.28E-12162202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAIRIGEKSS MFYEMFERDD QHALGQQDVT IDQAINFGVD DYKIPLQGAS GFNKGHGGDP  60
IQDTPITENH GQMIDSLALK KVVGKAYDGS SPTGNNATRG QWTPEEDTML QELMEQHGKR  120
AWSDVAREFP DRTGKQGRER WINHQEFKTQ KLRLYFATNN MAWTEDEELM LVKYHKKFGK  180
KWVKIARHIP GRPENSIKNQ WYAAERSLET KRKDKSKETR PSIVADYIRG LKEEEEGKGT  240
PAVPTSPVHA AGSGQEINNE VKVPFPGSNF AAASSQAPAS GDNPVPPSSS MSAPFLGRNA  300
GDHFPLEAMY DDPVFIDGHQ EPFAYPQESG YLPAPGHPFA EAHQAGGYGN QLQFHQHPTS  360
VQQQQAFSDF LATEDDPIHQ LFVARYYHEA ARNHDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-21992064102C-Myb DNA-Binding Domain
1msf_C1e-21992064102C-Myb DNA-Binding Domain
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G171200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704394.10.0transcription factor MYB62-like
TrEMBLA0A368SHR20.0A0A368SHR2_SETIT; Uncharacterized protein (Fragment)
STRINGPavir.Ib03926.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3220534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-37myb domain protein 98