PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G170100.1.p
Common NameLOC101758530, SETIT_038848mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 414aa    MW: 43603 Da    PI: 4.4788
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G170100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.8e-1964113255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Seita.9G170100.1.p  64 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 113
                         789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.07E-3063120No hitNo description
PfamPF008471.0E-1364113IPR001471AP2/ERF domain
SMARTSM003801.4E-3364127IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1964121IPR016177DNA-binding domain
PROSITE profilePS5103219.55964121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2764120IPR001471AP2/ERF domain
PRINTSPR003676.1E-86576IPR001471AP2/ERF domain
PRINTSPR003676.1E-887103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MALKRKASSG LADDLMISCG GDHTHAPPPL ATGNSSFVPA AASSRASWAE AVGAAAAAQR  60
GRKRFVGVRQ RPSGRWVAEI KDTIQKIRVW LGTFDTAEEA ARAYDEAACL LRGANTRTNF  120
WPRAAGAAAA AATSLQYPPP PPSALPSKVT NLLLLRLKKA RSSAGAVAQQ AAPPVQHRQA  180
QQVYGGQEEY SFHVDDFLSY DGNSTGDELQ AVKHEEGSNC SQETEDDGEE EEEEEAPLDF  240
GFMDKQPSPA READDAAGLY SPFEVVADEL GGAAEVEPSS AYGGESTASE PSGAIDEVMK  300
RMKYERKLSA SLYALSGVSE CLRMRLGDGG DIGAGRHELA LSGLRDACRK QQQEVVDEGG  360
VNVVGHDESS SCSNSVSSEA TSSSPEAASP PQDAKAVDSD MLLWSSLDLP PIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1353120571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G170100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277042e-85KJ727704.1 Zea mays clone pUT5643 AP2-EREBP transcription factor (EREB142) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986381.10.0ethylene-responsive transcription factor ESR1
TrEMBLK4AIY50.0K4AIY5_SETIT; Uncharacterized protein
STRINGSi038848m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-22related to AP2 11