PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G160700.5.p
Common NameSETIT_035110mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 525aa    MW: 54379.2 Da    PI: 6.0149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G160700.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.9e-17326372455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Seita.9G160700.5.p 326 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 372
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-21320384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-17325376No hitNo description
PfamPF000103.9E-14326372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-21326380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-18328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MNQFVPDWSN MGDTSRPLGE DDDLIELLWC NGHVVMQSQN NRKLPPRPEK AAAGAAAPAP  60
APAPQDDEAG LWFPFALADS LDKDIFSEFF CEAPPPPPPP APVPATTDVE AGKPCRDDDV  120
PLEDDCGRVG ACAVSDAPCD LMPPPKSTHV SGSRQQTMSL ADSGDNAGDL SDLVRAGSAG  180
KAAVEAGASS MLSAIGSSIC GSNQVLVQRA VSAPGRASGA ARGGGCGGGC SGSALPSAMG  240
SANANASGRG NEATVASSSG RSNYCFGTTT TTEPTSTSNR SSKRKRLDTE DSESPSEDAE  300
SESAAMLARK LPQKLTTARR SRAAEVHNLS ERRRRDRINE KMRALQELIP HCNKTDKASM  360
LDEAIEYLKS LQLQVQMMWM GSGIAAPPVM FPGVHQYLPR MGVGMGAAAM PSMPRMPFMA  420
PQPVVPNAPV NPVPLSPGYR GHMPAVGITE PYAHYLGVNH LQPTPSQGVG YYPLGAKAAV  480
QQNPAIHHVP GGGMPAAAAA APGALPPESA PSRGPGTMPT ALLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330335ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G160700.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566450.0EU956645.1 Zea mays clone 1569257 PIL5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982351.10.0transcription factor PIF1 isoform X3
TrEMBLA0A368SH720.0A0A368SH72_SETIT; Uncharacterized protein
STRINGSi035110m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-34phytochrome interacting factor 3-like 5