PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.9G160700.4.p | ||||||||
Common Name | SETIT_035110mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 521aa MW: 54047.8 Da PI: 6.1375 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.7 | 7.8e-17 | 326 | 372 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Seita.9G160700.4.p 326 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 372 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-21 | 320 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.457 | 322 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.78E-17 | 325 | 376 | No hit | No description |
Pfam | PF00010 | 3.8E-14 | 326 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-21 | 326 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-18 | 328 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 521 aa Download sequence Send to blast |
MNQFVPDWSN MGDTSRPLGE DDDLIELLWC NGHVVMQSQN NRKLPPRPEK AAAGAAAPAP 60 APAPQDDEAG LWFPFALADS LDKDIFSEFF CEAPPPPPPP APVPATTDVE AGKPCRDDDV 120 PLEDDCGRVG ACAVSDAPCD LMPPPKSTHV SGSRQQTMSL ADSGDNAGDL SDLVRAGSAG 180 KAAVEAGASS MLSAIGSSIC GSNQVLVQRA VSAPGRASGA ARGGGCGGGC SGSALPSAMG 240 SANANASGRG NEATVASSSG RSNYCFGTTT TTEPTSTSNR SSKRKRLDTE DSESPSEDAE 300 SESAAMLARK LPQKLTTARR SRAAEVHNLS ERRRRDRINE KMRALQELIP HCNKTDKASM 360 LDEAIEYLKS LQLQVQMMWM GSGIAAPPVM FPGVHQYLPR MGVGMGAAAM PSMPRMPFMA 420 PQPVVPNAPV NPVPLSPGYR GHMPAVGITE PYAHYLGVNH LQPTPSQHFA QGVGYYPLGA 480 KAAVQQNPAI HHVPGGGMPA AAAAAPGALP PESAPSRGPG * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 330 | 335 | ERRRRD |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.9G160700.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU956645 | 0.0 | EU956645.1 Zea mays clone 1569257 PIL5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982352.1 | 0.0 | transcription factor PIF1 isoform X4 | ||||
TrEMBL | A0A368SH31 | 0.0 | A0A368SH31_SETIT; Uncharacterized protein | ||||
STRING | Si035110m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20180.1 | 2e-34 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.9G160700.4.p |