PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G160700.3.p
Common NameSETIT_035110mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 486aa    MW: 50061.3 Da    PI: 7.0216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G160700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.87.1e-17291337455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Seita.9G160700.3.p 291 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 337
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-21285349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-17290341No hitNo description
PfamPF000103.5E-14291337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-21291345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-18293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MQSQNNRKLP PRPEKAAAGA AAPAPAPAPQ DDEAGLWFPF ALADSLDKDI FSEFFCEAPP  60
PPPPPAPVPA TTDVEAGKPC RDDDVPLEDD CGRVGACAVS DAPCDLMPPP KSTHVSGSRQ  120
QTMSLADSGD NAGDLSDLVR AGSAGKAAVE AGASSMLSAI GSSICGSNQV LVQRAVSAPG  180
RASGAARGGG CGGGCSGSAL PSAMGSANAN ASGRGNEATV ASSSGRSNYC FGTTTTTEPT  240
STSNRSSKRK RLDTEDSESP SEDAESESAA MLARKLPQKL TTARRSRAAE VHNLSERRRR  300
DRINEKMRAL QELIPHCNKT DKASMLDEAI EYLKSLQLQV QMMWMGSGIA APPVMFPGVH  360
QYLPRMGVGM GAAAMPSMPR MPFMAPQPVV PNAPVNPVPL SPGYRGHMPA VGITEPYAHY  420
LGVNHLQPTP SQHFAQGVGY YPLGAKAAVQ QNPAIHHVPG GGMPAAAAAA PGALPPESAP  480
SRGPG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G160700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566450.0EU956645.1 Zea mays clone 1569257 PIL5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982350.10.0transcription factor PIF1 isoform X1
TrEMBLA0A368SH520.0A0A368SH52_SETIT; Uncharacterized protein
STRINGSi035110m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-34phytochrome interacting factor 3