PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G160300.1.p | ||||||||
Common Name | SETIT_039882mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 364aa MW: 39026.4 Da PI: 5.8709 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.7 | 6.6e-19 | 7 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l++ vk +G + W++++++++ gR +kqc++rw ++l Seita.9G160300.1.p 7 RGPWTEEEDETLKEMVKVYGERKWAAVSQHLP-GRIGKQCRERWTNHL 53 89******************************.************996 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.6e-15 | 64 | 103 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+ +d l++a+k +G++ W+ Iar ++ gR+++ +k++w+ Seita.9G160300.1.p 64 WTENDDIELIKAHKIHGNR-WSMIARQLP-GRSENAVKNHWN 103 *******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.365 | 2 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-30 | 5 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-18 | 6 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 7 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-17 | 7 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.14E-17 | 9 | 53 | No hit | No description |
PROSITE profile | PS51294 | 18.275 | 58 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-13 | 60 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-15 | 62 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.58E-12 | 64 | 106 | No hit | No description |
Pfam | PF00249 | 1.4E-12 | 64 | 103 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MRPPTLRGPW TEEEDETLKE MVKVYGERKW AAVSQHLPGR IGKQCRERWT NHLRPDIDKA 60 KTIWTENDDI ELIKAHKIHG NRWSMIARQL PGRSENAVKN HWNATKRSLK AKRRLKKKKN 120 AEAPPGQQWS ILEQYIRSLP PAAVAEDGAG AAPQQAPSDD SPPSSYNTGG GYYGGEVVSP 180 PLAPAAAGFD PAALGMYLSA AAGNNPSSAA AAVNLGAMNP DLAPPSYLGL DLNSYYYYGG 240 APLAPAARAP PPQMMMMEQD QQDSSNASNS NNLITYPFVD HMAWQSSSVH ADAYYANNAS 300 AGHYPYYYYG DAAGAGPSGG GGGGGGGDAT AIPDDVDVVQ MASREFQMNP SEDEVTLNLA 360 GFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-40 | 3 | 105 | 3 | 103 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G160300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022685396.1 | 0.0 | transcriptional activator Myb | ||||
TrEMBL | A0A368SIV8 | 0.0 | A0A368SIV8_SETIT; Uncharacterized protein | ||||
STRING | Si039882m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09370.1 | 5e-38 | myb domain protein 3r-3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G160300.1.p |