PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G158800.1.p | ||||||||
Common Name | LOC101755667, SETIT_034228mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 857aa MW: 93049.8 Da PI: 6.5847 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 30 | 87 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Seita.9G158800.1.p 30 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87 6789****************************************************97 PP | |||||||
2 | START | 174.1 | 8.8e-55 | 178 | 385 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l vi +g g+ Seita.9G158800.1.p 178 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVIPTGngGT 267 68999*****************************************************.8888888888********************** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l++++++a+++l++ Rdf+++Ry+ l++g++vi+++S+++ + p+ ++++vRae+lpSg+li+p+++g+s +++v+hvdl+++++ Seita.9G158800.1.p 268 IELIYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSV 358 **************999****************************9999999*************************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 178 hwllrslvksglaegaktwvatlqrqc 204 +++lr+l++s + ++kt+ a+l++ + Seita.9G158800.1.p 359 PEVLRPLYESPKILAQKTTIAALRHIR 385 **********************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.435 | 24 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-15 | 26 | 92 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-17 | 28 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.04E-16 | 29 | 89 | No hit | No description |
Pfam | PF00046 | 5.1E-16 | 30 | 87 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-18 | 31 | 87 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.82E-6 | 81 | 120 | No hit | No description |
PROSITE profile | PS50848 | 26.956 | 168 | 368 | IPR002913 | START domain |
CDD | cd08875 | 3.13E-70 | 172 | 388 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.7E-24 | 176 | 360 | IPR023393 | START-like domain |
SMART | SM00234 | 8.2E-47 | 177 | 387 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.06E-38 | 178 | 388 | No hit | No description |
Pfam | PF01852 | 1.6E-52 | 178 | 385 | IPR002913 | START domain |
Pfam | PF08670 | 1.8E-50 | 713 | 855 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 857 aa Download sequence Send to blast |
MAAAMVVGGG GKDRSSPGGG GAPQVDTGKY VRYTPEQVEA LERVYSECPK PSSLRRQQLI 60 RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS 120 RLVYENGYMR QQLHNPSVAT TDTSCESVVT SGQHHQQQNA AAPRPQRDAN NPAGLLAIAE 180 ETLAEFLSKA TGTAVDWVQM VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEI 240 LKDRPSWYRD CRCVDILHVI PTGNGGTIEL IYMQTYAPTT LAAPRDFWTL RYTSGLEDGS 300 LVICERSLTQ STGGPSGPNT PNFVRAEVLP SGYLIRPCEG GGSMIHIVDH VDLDAWSVPE 360 VLRPLYESPK ILAQKTTIAA LRHIRQIAHE SSGEMPYGGG RQPAVLRTFS QRLSRGFNDA 420 VNGFPDDGWS LMSSDGAEDV TIAINSSPNK LVGSHVNSSQ LFSAIGGGIL CAKASMLLQN 480 VPPALLVRFL REHRSEWADP GVDAYSAAAL RASPYAVPGL RASGFMGSQV ILPLAHTLEH 540 EEFLEVIRLE GHSLCHDEVV LSRDMYLLQL CSGVDENAAG ACAQLVFAPI DESFADDAPL 600 LPSGFRVIPL DAKTDPPSGT RTLDLASTLE VGSGGTTRAS SDASSTCNTR SVLTIAFQFS 660 YENHLRESVA AMARQYVRTV VASVQRVAMA IAPSRLGGQL EMKQTPGSPE AHTLARWIGR 720 SYRFHTGAEL LRADTQCTDA SLKALWQHSD SIMCCSLKAA PVFTFANQAG LDMLETTLIA 780 LQDISLEKIL DDDGRKALCT EYPKIMQQGF AYLPGGVCVS SMGRPVSYEQ AVAWKVLSDD 840 DTPHCLAFMF VNWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G158800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103284 | 0.0 | AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982339.1 | 0.0 | homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | K4A5S4 | 0.0 | K4A5S4_SETIT; Uncharacterized protein | ||||
STRING | Si034228m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G158800.1.p |
Entrez Gene | 101755667 |
Publications ? help Back to Top | |||
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