PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G155700.2.p
Common NameLOC101778378, SETIT_036465mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 343aa    MW: 36438.7 Da    PI: 9.8797
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G155700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.91e-30161217158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rkpylheSRh hA+rR+RgsgGrF
  Seita.9G155700.2.p 161 DAPIYVNPKQYEGILRRRRARAKAERENRL-AKGRKPYLHESRHLHAMRRARGSGGRF 217
                         68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.2E-34159220IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.965160220IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.2E-28163217IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-22163185IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-22194217IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MMSFKGHEGF GQVAAGGQAS HGAALPWWAG PQLLYGEPAP LSPEETRREG QFQVVPGAQG  60
TPDPAPPAAA KRGSPEVLKF SVFQGNSESD GKGEKVPEHS TTVSLQSPFP EYNGRFEIGL  120
GQSMAPSNYS SADQCYGMLT TYGMRSMSSG RLLLPLNAPA DAPIYVNPKQ YEGILRRRRA  180
RAKAERENRL AKGRKPYLHE SRHLHAMRRA RGSGGRFLNT KKEGAANANG SGRTAAAAPP  240
ARFATSPSSE PPRAPPGLGN VSNQRCHSRS SVSSLSGSEV SSIYDHHEDH ASHHRQYGGG  300
MVRAPPFFTP LPAIMDGDHG GAAAIPSFKW AASDGCCELL KA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-17161219261HAPB protein
4g92_A3e-17161219261HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G155700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982309.10.0nuclear transcription factor Y subunit A-10
RefseqXP_004982310.10.0nuclear transcription factor Y subunit A-10
RefseqXP_004982311.10.0nuclear transcription factor Y subunit A-10
TrEMBLK4AC580.0K4AC58_SETIT; Uncharacterized protein
STRINGSi036465m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-19nuclear factor Y, subunit A10