PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G149300.1.p
Common NameLOC101754310, SETIT_037583mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 201aa    MW: 20773.7 Da    PI: 8.3704
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G149300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.94e-44311301100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++Cv+apyfp  +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq+e l+
  Seita.9G149300.1.p  31 PCAACKLLRRRCAAGCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPVQHRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQVEALQ 121
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         a+lal+++e
  Seita.9G149300.1.p 122 AQLALAQAE 130
                         *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.6930131IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-4331128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MRDAVAVAVA VPGVGGRAGG GGGAASSASA PCAACKLLRR RCAAGCVFAP YFPPGEPHKF  60
ANVHKVFGAS NVSKLLQEIP VQHRGDAVSS LVYEANARVR DPVYGCVGAI SSLQQQVEAL  120
QAQLALAQAE MVRLKMSNDY IVHRLKAASR GGGGSSYAGS PSSMSSPKTA EPEAHCKATP  180
ELLDMVVDQP GMDDAQFWSY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-51281338113LOB family transfactor Ramosa2.1
5ly0_B8e-51281338113LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11422GGRAGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G149300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699110.0BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds.
GenBankKJ7276500.0KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982247.11e-144LOB domain-containing protein 4
SwissprotQ8LBW34e-57LBD12_ARATH; LOB domain-containing protein 12
TrEMBLK4AFC61e-143K4AFC6_SETIT; Uncharacterized protein
STRINGSi037583m1e-144(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.17e-37LOB domain-containing protein 4
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]