PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G143900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 359aa    MW: 38125.2 Da    PI: 6.6362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G143900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.3e-15171217455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Seita.9G143900.1.p 171 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATKYVKELQ 217
                         699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.05167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12171217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17171233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-19171229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-15172221No hitNo description
SMARTSM003533.3E-16173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.088284358IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEDDSSLFMQ WAMDTLQHER PMAAVVNDDC GSEATLFPSL RALREASHAA EMVQELIAAA  60
PASSWSSGSG DTTEGSSGGN NSAGGAAMDH DAWPPTPNSA SRRAAPSRSS GGTNPPVSWN  120
FGAASALPGS DGVLAEAART RRLPEIVCVS PLTRRTGVKG TGSMSAPYAQ DHIIAERKRR  180
EKINQRFIEL STVIPGLKKM DKATILSDAT KYVKELQEKL KDLEAGGSNG HRSIETVVVV  240
KRPCLHAPAV PDDDGSPLSA SSGTPAERKQ LPEIEARFSE KSVMVRITCE NGKGVAVKVL  300
TEVEELRLSI IHANVMPFPA GTLIITITAK VEEGFTVTAE EIVGRLNSAL LMRKQKTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERKRRE
2176181RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G143900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982204.10.0transcription factor bHLH18
TrEMBLA0A368SGH50.0A0A368SGH5_SETIT; Uncharacterized protein
STRINGSi039325m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-45bHLH family protein