PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G143800.1.p
Common NameLOC101770135, SETIT_036185mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 379aa    MW: 39509.1 Da    PI: 6.1683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G143800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.37.6e-15179226355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+++Lq
  Seita.9G143800.1.p 179 QDHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVRELQ 226
                         5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.056176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-18180234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-12180226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-17180236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-15181230No hitNo description
SMARTSM003531.5E-15182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDDSSQFMQW ALSTLQHEQP PPSTPAPAAA YDNNGCDTVS QFPVLGYSVS VDSLVPGEPP  60
AREGQRATNS WSSVDTDSGS GSGGAGACVA AWSPTAMCAT AAPSSCSSGT NNRMSWDFNS  120
ASAAAQLIIE PQQPNSAAAM AEGGGGGVPQ MTQRGSLSPP TRRASAKISA SSSSAPYSQD  180
HIIAERKRRE KINQRFIELS TVIPGLKKMD KATILSDATR YVRELQEKLK GLQEDGGGGR  240
GRGMESAVLV KRPCIAAPDG DDDGGARSQH AAAAGPAATG NALPEIEARI SDGNVVMVRV  300
HCRDAKGVLV RLLAEVEELH LAITHTNVVQ FSASVLIINI IAKVEQGFNT TADDIVGRLN  360
AALHQCVRNS AEQARSCC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189ERKRRE
2185190RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G143800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982203.10.0transcription factor bHLH18
TrEMBLK4ABC80.0K4ABC8_SETIT; Uncharacterized protein
STRINGSi036185m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-30bHLH family protein