PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.9G137000.1.p | ||||||||
Common Name | LOC101783497, SETIT_039749mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 312aa MW: 35125.8 Da PI: 6.0034 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.4 | 1.9e-32 | 5 | 98 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 F+ k+ye++ d++++ ++sw gnsfvv+d++ ++ +Lp++Fkh nfaSF+RQLn+YgF+kv+ ++ weF+h+sF +g+ Seita.9G137000.1.p 5 FVAKTYEMVADAATDAVVSWApgGAGNSFVVWDPQALSVGLLPRFFKHANFASFIRQLNIYGFRKVNPDR---------WEFAHESFLAGQ 86 9********************55556*****************************************999.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 k+ll+kikr++ Seita.9G137000.1.p 87 KHLLRKIKRRRA 98 *********975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.2E-51 | 1 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.8E-34 | 2 | 96 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.67E-30 | 3 | 96 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.3E-28 | 5 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-17 | 5 | 28 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-17 | 45 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 46 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-17 | 58 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MPAPFVAKTY EMVADAATDA VVSWAPGGAG NSFVVWDPQA LSVGLLPRFF KHANFASFIR 60 QLNIYGFRKV NPDRWEFAHE SFLAGQKHLL RKIKRRRAPK PQMEAHPRNG ASICFKQPKD 120 SGEVESLKRD RAALRAEVLT LKQQYSSCKS QLVALEERIL NNERNQQKAI AFFAKVLSNP 180 TFVQQVLLNY AANKELYSTA KRKRLMENEE QRVGTLKNGL EPTLATEASA SAASSDGSVV 240 AKHEPMPEWN YQEMDNIWED VWDELDAIPG AEMDQEDKAA AGFEVEEFTG RPCGWVDDCP 300 YLVEQMQFVE H* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-22 | 5 | 96 | 20 | 120 | Heat shock factor protein 1 |
5d5u_B | 5e-22 | 5 | 96 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-22 | 5 | 96 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-22 | 5 | 96 | 29 | 129 | Heat shock factor protein 1 |
5hdg_A | 3e-22 | 1 | 96 | 7 | 110 | Heat shock factor protein 1 |
5hdn_A | 3e-22 | 1 | 96 | 7 | 110 | Heat shock factor protein 1 |
5hdn_B | 3e-22 | 1 | 96 | 7 | 110 | Heat shock factor protein 1 |
5hdn_C | 3e-22 | 1 | 96 | 7 | 110 | Heat shock factor protein 1 |
5hdn_D | 3e-22 | 1 | 96 | 7 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.9G137000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT069572 | 1e-164 | BT069572.1 Zea mays full-length cDNA clone ZM_BFb0177O03 mRNA, complete cds. | |||
GenBank | HQ858724 | 1e-164 | HQ858724.1 Zea mays clone UT1392 HSF transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982151.1 | 0.0 | heat stress transcription factor A-6a | ||||
Swissprot | Q657C0 | 1e-151 | HFA6B_ORYSJ; Heat stress transcription factor A-6a | ||||
TrEMBL | K4ALG8 | 0.0 | K4ALG8_SETIT; Uncharacterized protein | ||||
STRING | Si039749m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26150.1 | 6e-72 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.9G137000.1.p |
Entrez Gene | 101783497 |
Publications ? help Back to Top | |||
---|---|---|---|
|