PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G129400.2.p | ||||||||
Common Name | LOC101762684, SETIT_037045mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YA | ||||||||
Protein Properties | Length: 267aa MW: 28192.2 Da PI: 9.403 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.9 | 6.8e-33 | 169 | 225 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ k+rkpylheSRh+hA+rR+Rg+gGrF Seita.9G129400.2.p 169 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKTRKPYLHESRHQHAMRRARGNGGRF 225 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.5E-36 | 167 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.651 | 168 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.4E-28 | 170 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.7E-25 | 171 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 173 | 193 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.7E-25 | 202 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MESRPGGTNL VEPRGQGAAL PSVGAAMQPW WTTSGAGLGA VSPAVVAPGS GAGISLSSSP 60 VGGSGGAGAS KGAASDESSE DSRRSGEPKD GSAGQEKNHA TSQMPALVSE YLAPYSQLEL 120 NQSIASAAYQ YPDPYYTGMV PPYGTQAVAH FQLPGLAHSR MPLPLEVSEE PVYVNAKQYH 180 GILRRRQSRA KAELEKKVVK TRKPYLHESR HQHAMRRARG NGGRFLNTKK TDNGSPNGNG 240 DPEKGDQHSE HLHVPPDLLQ LRQNEA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-22 | 169 | 233 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G129400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063803 | 0.0 | BT063803.1 Zea mays full-length cDNA clone ZM_BFc0109B09 mRNA, complete cds. | |||
GenBank | EU962076 | 0.0 | EU962076.1 Zea mays clone 240068 nuclear transcription factor Y subunit A-1 mRNA, complete cds. | |||
GenBank | KJ728293 | 0.0 | KJ728293.1 Zea mays clone pUT6573 CCAAT-HAP2 transcription factor (CA2P16) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982098.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | K4ADT8 | 0.0 | K4ADT8_SETIT; Uncharacterized protein | ||||
STRING | Si037045m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 2e-41 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G129400.2.p |
Entrez Gene | 101762684 |