PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G129400.1.p
Common NameLOC101762684, SETIT_037045mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 267aa    MW: 28192.2 Da    PI: 9.403
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G129400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.96.8e-33169225158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+Rg+gGrF
  Seita.9G129400.1.p 169 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKTRKPYLHESRHQHAMRRARGNGGRF 225
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-36167228IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.651168228IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-28170225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.7E-25171193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860173193IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.7E-25202225IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MESRPGGTNL VEPRGQGAAL PSVGAAMQPW WTTSGAGLGA VSPAVVAPGS GAGISLSSSP  60
VGGSGGAGAS KGAASDESSE DSRRSGEPKD GSAGQEKNHA TSQMPALVSE YLAPYSQLEL  120
NQSIASAAYQ YPDPYYTGMV PPYGTQAVAH FQLPGLAHSR MPLPLEVSEE PVYVNAKQYH  180
GILRRRQSRA KAELEKKVVK TRKPYLHESR HQHAMRRARG NGGRFLNTKK TDNGSPNGNG  240
DPEKGDQHSE HLHVPPDLLQ LRQNEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-22169233266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G129400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0638030.0BT063803.1 Zea mays full-length cDNA clone ZM_BFc0109B09 mRNA, complete cds.
GenBankEU9620760.0EU962076.1 Zea mays clone 240068 nuclear transcription factor Y subunit A-1 mRNA, complete cds.
GenBankKJ7282930.0KJ728293.1 Zea mays clone pUT6573 CCAAT-HAP2 transcription factor (CA2P16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982098.10.0nuclear transcription factor Y subunit A-1
TrEMBLK4ADT80.0K4ADT8_SETIT; Uncharacterized protein
STRINGSi037045m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-41nuclear factor Y, subunit A7